Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 119716617

GI number: 119716617

Start: 2545220

End: 2546458

Strand: Direct

Name: secF [H]

Synonym: Noca_2390

Alternate gene names: 119716617

Gene position: 2545220-2546458 (Clockwise)

Preceding gene: 119716616

Following gene: 119716618

Centisome position: 51.05

GC content: 69.25

Gene sequence:

>1239_bases
ATGGGCAAGTTCTCGCGCCTCGGCAACGACCTCTACTCCGGCGACAAGTCGATCGACTTCGTCGGTCGCAAGTGGCTCTG
GTACGCCATCTCGGTCGTCATCATCGTCGGCTCCCTGCTCGGCCTGGCCGTGAAGGGCCTGGACATGGGCATCGAGTTCG
TCGGTGGCGCCGAGTACAAGGTCAAGGTCGCCTCGGCCGACCAGGCCCTCGCGGACCAGCTGCGCACCGACGTCGCGGCC
ACCGGCATCGACGCCGCGCAGCAACCGGTCGTCACCACCAGCGGCAAGGACGCGGTCCTCATCCAGGTCAAGCCGCTGAC
GACGGCCGAGAACGAGCAGATCAAGAACACGATCGCGGACACCACCGGCACCGACCCGACCCAGATCAACGCCACCGAGA
TCGGCCCGAGCTGGGGCAAGGAGATCGCCAAACGGTCCGGGACCGGCCTGGTGGTGTTCCTGATCCTGGTCGTGATCTTC
ATCTGGGCGTACTTCCGTGAGTGGAAGATGTCCGTCGGCGCGATCGTGGCCCTCGCCCACGACGTGGTGATCACCGTCGG
CGTCTACGCGCTGTCGGGCTTCGAGGTCACGCCCGCGACGGTCACCGGCCTGCTGACCATCCTGGGCTTCTCGCTCTACG
ACACCGTCGTGGTCTTCGACAAGGTCCGGGAGAACACCAAGAACCTCCGTGAGAGCCGCACCACCTACGCCAAGGCGGCC
AACCTCGCGGTCAACCAGACCCTGGTGCGCTCGATCAACACCTCGGTGGTGGCCCTCATCCCGGTCGGCGTGATCTTGTA
CGTCAGCGCCGTGCAGCTCGGCGCGAGCACCCTGAAGGACCTCGCGCTGGCGCTGTTCGTCGGCATGGCGGCAGGGGCGT
ACTCCTCGATCTTCATCGCCACGCCGCTGGTGGTGCAGCTCAAGGCCGGTGAGACCGACGTGGTCCAGGCCGAGAAGCGG
GACAAGGCCCGGCAGAAGAAGGTCGAGGCCGACCGGTACGCCGCGGTGCCGGCGTTCGCCGAGGACATGCCGATCCACGA
CGAGCCGGGCGTCGCCGACGTGCCCGAGGGTGACGGCCCGGTCGCGCGGCCGGCGAGCCCGGGCCGGGCGCCGCAGACTC
CCGAGGCCGCCGGTCGGGGCCGGATCGCCCCCCAGGGTCACGGCCCGGTCCGGCCCTCCAGCGCCGCCGGCCGCCAGCAG
CCGACCCGCCAGCCCCGCTCCAAGCGGGGCAAGAAGTGA

Upstream 100 bases:

>100_bases
TCGGCAAGTACAAGTTCTTCAACCGGGGGCACAAGCTCTCCGGCCTCGACGCCGAGGCCCTCGGAGTCGACCGGATCAAC
ATCGCGGGAGGGAGGGCCTG

Downstream 100 bases:

>100_bases
CGCTGCCCGGGCCGGAGGCACCGGGGCTCTCCGAGGCGCTCGCCCTGATCGCCGACGTCCCCGACTTCCCCCAGCCCGGG
ATCCTCTTCAAGGACATCAC

Product: protein translocase subunit secF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MGKFSRLGNDLYSGDKSIDFVGRKWLWYAISVVIIVGSLLGLAVKGLDMGIEFVGGAEYKVKVASADQALADQLRTDVAA
TGIDAAQQPVVTTSGKDAVLIQVKPLTTAENEQIKNTIADTTGTDPTQINATEIGPSWGKEIAKRSGTGLVVFLILVVIF
IWAYFREWKMSVGAIVALAHDVVITVGVYALSGFEVTPATVTGLLTILGFSLYDTVVVFDKVRENTKNLRESRTTYAKAA
NLAVNQTLVRSINTSVVALIPVGVILYVSAVQLGASTLKDLALALFVGMAAGAYSSIFIATPLVVQLKAGETDVVQAEKR
DKARQKKVEADRYAAVPAFAEDMPIHDEPGVADVPEGDGPVARPASPGRAPQTPEAAGRGRIAPQGHGPVRPSSAAGRQQ
PTRQPRSKRGKK

Sequences:

>Translated_412_residues
MGKFSRLGNDLYSGDKSIDFVGRKWLWYAISVVIIVGSLLGLAVKGLDMGIEFVGGAEYKVKVASADQALADQLRTDVAA
TGIDAAQQPVVTTSGKDAVLIQVKPLTTAENEQIKNTIADTTGTDPTQINATEIGPSWGKEIAKRSGTGLVVFLILVVIF
IWAYFREWKMSVGAIVALAHDVVITVGVYALSGFEVTPATVTGLLTILGFSLYDTVVVFDKVRENTKNLRESRTTYAKAA
NLAVNQTLVRSINTSVVALIPVGVILYVSAVQLGASTLKDLALALFVGMAAGAYSSIFIATPLVVQLKAGETDVVQAEKR
DKARQKKVEADRYAAVPAFAEDMPIHDEPGVADVPEGDGPVARPASPGRAPQTPEAAGRGRIAPQGHGPVRPSSAAGRQQ
PTRQPRSKRGKK
>Mature_411_residues
GKFSRLGNDLYSGDKSIDFVGRKWLWYAISVVIIVGSLLGLAVKGLDMGIEFVGGAEYKVKVASADQALADQLRTDVAAT
GIDAAQQPVVTTSGKDAVLIQVKPLTTAENEQIKNTIADTTGTDPTQINATEIGPSWGKEIAKRSGTGLVVFLILVVIFI
WAYFREWKMSVGAIVALAHDVVITVGVYALSGFEVTPATVTGLLTILGFSLYDTVVVFDKVRENTKNLRESRTTYAKAAN
LAVNQTLVRSINTSVVALIPVGVILYVSAVQLGASTLKDLALALFVGMAAGAYSSIFIATPLVVQLKAGETDVVQAEKRD
KARQKKVEADRYAAVPAFAEDMPIHDEPGVADVPEGDGPVARPASPGRAPQTPEAAGRGRIAPQGHGPVRPSSAAGRQQP
TRQPRSKRGKK

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=341, Percent_Identity=27.2727272727273, Blast_Score=135, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 43693; Mature: 43562

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKFSRLGNDLYSGDKSIDFVGRKWLWYAISVVIIVGSLLGLAVKGLDMGIEFVGGAEYK
CCCHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEE
VKVASADQALADQLRTDVAATGIDAAQQPVVTTSGKDAVLIQVKPLTTAENEQIKNTIAD
EEECCHHHHHHHHHHHHHHHCCCCHHCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHC
TTGTDPTQINATEIGPSWGKEIAKRSGTGLVVFLILVVIFIWAYFREWKMSVGAIVALAH
CCCCCCCEEEHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVVITVGVYALSGFEVTPATVTGLLTILGFSLYDTVVVFDKVRENTKNLRESRTTYAKAA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLAVNQTLVRSINTSVVALIPVGVILYVSAVQLGASTLKDLALALFVGMAAGAYSSIFIA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
TPLVVQLKAGETDVVQAEKRDKARQKKVEADRYAAVPAFAEDMPIHDEPGVADVPEGDGP
CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCC
VARPASPGRAPQTPEAAGRGRIAPQGHGPVRPSSAAGRQQPTRQPRSKRGKK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
>Mature Secondary Structure 
GKFSRLGNDLYSGDKSIDFVGRKWLWYAISVVIIVGSLLGLAVKGLDMGIEFVGGAEYK
CCHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEE
VKVASADQALADQLRTDVAATGIDAAQQPVVTTSGKDAVLIQVKPLTTAENEQIKNTIAD
EEECCHHHHHHHHHHHHHHHCCCCHHCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHC
TTGTDPTQINATEIGPSWGKEIAKRSGTGLVVFLILVVIFIWAYFREWKMSVGAIVALAH
CCCCCCCEEEHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVVITVGVYALSGFEVTPATVTGLLTILGFSLYDTVVVFDKVRENTKNLRESRTTYAKAA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLAVNQTLVRSINTSVVALIPVGVILYVSAVQLGASTLKDLALALFVGMAAGAYSSIFIA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
TPLVVQLKAGETDVVQAEKRDKARQKKVEADRYAAVPAFAEDMPIHDEPGVADVPEGDGP
CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCC
VARPASPGRAPQTPEAAGRGRIAPQGHGPVRPSSAAGRQQPTRQPRSKRGKK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]