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The map label for this gene is secD [H]

Identifier: 119716616

GI number: 119716616

Start: 2543526

End: 2545220

Strand: Direct

Name: secD [H]

Synonym: Noca_2389

Alternate gene names: 119716616

Gene position: 2543526-2545220 (Clockwise)

Preceding gene: 119716615

Following gene: 119716617

Centisome position: 51.01

GC content: 69.85

Gene sequence:

>1695_bases
ATGGCACGCAAGTCGTACCGCCCCGGACGCACCCTGGTGGTGTTCTTCCTGGTGGTGGCGGTCTCCTACGGCCTGGTGGC
CCTCGGCGGCACCTGGAAGCCGGAGCTGGGGCTGGACCTCAAGGGCGGCACCCGGATCATGATGACAGCGACCGGCAACC
CCACCTCGGCGAACCTCAACGAGGCCGCCGGCATCATCGACCAGCGCGTGAACGGCTCGGGTGTCGCCGAGGCCGAGGTG
ACCACCCAGGGCGGCCGGAACATCATCGTCGAGATCCCGGGCCCGACCTCGAACTCGCTCGTCGGCCTGGCGACCCGGAC
GGCGCAGCTGCGCTTCCGCACCGTCGCCTGCACGAGCCAGACGCCCGGTCCGTGCGCCACCGGCGCCGCGCCGACGCTGC
CGAACGACGGGCCCTCGCTCGCGCCCACGGACGGCGCGACGGGGAACTCCAAGAACCGCCCGGGCTTCCTGGCCAAGCCG
TCGGCCAAGCCGTCGCAGCAGCCCTCCCAGACGGCGTCGGCCTCCGAGTCCTCCTCGCCGACGGAGTCGCCCAGCGAGTC
GTCCAGCGAGTCCCCGGGTGCCGGCTCCGACGACCCCGCCCAGATGGCCCTGGACTTCATGACCGACCCCGGCCGGGCCG
CGATCGAGGCGTTCAACGCCTACACCTGCCCCACGACCAAGCCGGTCGACGACAACCCGGACAAGTTCCTGGTCACCTGC
GGGACCGAGGCTGAGGGCGACGCCGGCGTCAAGTACCTGCTCTCGCCCGCCGCTGTCGAGGGCACCGACCTGAACAGCGC
GGACGCGGTCGTCCCCTCGCAGTCGGTGTCCTGGATCGTTCAGCTCTCCCTCGGCGGCGAGGGCAAGGGCGTCTTCGCGG
ACCTGTCCCGCGCGATGTCCGGCACCGGCCAGCAGTTCGCGGTGGTGCTCGACGGCGTCGTGATCTCCAGCCCCGTGTTC
ACAGGGGTGATCCCGAACGGTGACGCCCAGATCACCGGCAACTTCACCAAGAGCTCGGCCCAGTCGCTCGCGACCAGCCT
CAAGTACGGCGCCCTGCCGATCGCCTTCGACAAGGAGGCGACCTCGGTCGAGCAGATCGGCGCCTCCCTGGCGGGCGACC
AGCTCTCGGCGGGCATCCTCGCGGGCATCATCGGCCTGGCCCTCGTGATGCTCTACTGCCTGCTGTACTACCGCGGCCTC
GGCCTGGTGGTGATCGCCTCCCTCGTCGTCGCCGGCGTGGTGACCTACTCGACGGTGCTGCTGCTCAGCAGGACGGCCGG
CTTCACGCTGACGCTGCCCGGCATCGCCGGCCTGATCGTGGCGGTCGGCATCACCGCGGACTCCTTCATCGTGTACTTCG
AGCGGATCCGTGACGAGATGCGGGACGGCAAGTCGATGCGGGTCGCGGTCCAAGCGGGCTGGAAGCGCGCACGGGGCACC
TGTGTAGCGGCGGACACGGTCTCGCTGCTGGCCGCGATCGTGCTCTACATCTTCGCCACGGGCGTCGTGAAGGGCTTCGC
GTTCACGCTCGGCATCTCCACGGTCATCGACCTGGCCATCTTCTTCTGGTTCACCCACCCGATGGTGTCGGTGCTCGGCA
AGTACAAGTTCTTCAACCGGGGGCACAAGCTCTCCGGCCTCGACGCCGAGGCCCTCGGAGTCGACCGGATCAACATCGCG
GGAGGGAGGGCCTGA

Upstream 100 bases:

>100_bases
GTCGTCCGGGGCGCGGTGGGCAGCATCGCCACCAAGGCCGATGTGCCGGACCTGACCGATGACCGGCCGGAGAGCGCCTC
CGGCCCGGAGGAGAGCTGAC

Downstream 100 bases:

>100_bases
TGGGCAAGTTCTCGCGCCTCGGCAACGACCTCTACTCCGGCGACAAGTCGATCGACTTCGTCGGTCGCAAGTGGCTCTGG
TACGCCATCTCGGTCGTCAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 564; Mature: 563

Protein sequence:

>564_residues
MARKSYRPGRTLVVFFLVVAVSYGLVALGGTWKPELGLDLKGGTRIMMTATGNPTSANLNEAAGIIDQRVNGSGVAEAEV
TTQGGRNIIVEIPGPTSNSLVGLATRTAQLRFRTVACTSQTPGPCATGAAPTLPNDGPSLAPTDGATGNSKNRPGFLAKP
SAKPSQQPSQTASASESSSPTESPSESSSESPGAGSDDPAQMALDFMTDPGRAAIEAFNAYTCPTTKPVDDNPDKFLVTC
GTEAEGDAGVKYLLSPAAVEGTDLNSADAVVPSQSVSWIVQLSLGGEGKGVFADLSRAMSGTGQQFAVVLDGVVISSPVF
TGVIPNGDAQITGNFTKSSAQSLATSLKYGALPIAFDKEATSVEQIGASLAGDQLSAGILAGIIGLALVMLYCLLYYRGL
GLVVIASLVVAGVVTYSTVLLLSRTAGFTLTLPGIAGLIVAVGITADSFIVYFERIRDEMRDGKSMRVAVQAGWKRARGT
CVAADTVSLLAAIVLYIFATGVVKGFAFTLGISTVIDLAIFFWFTHPMVSVLGKYKFFNRGHKLSGLDAEALGVDRINIA
GGRA

Sequences:

>Translated_564_residues
MARKSYRPGRTLVVFFLVVAVSYGLVALGGTWKPELGLDLKGGTRIMMTATGNPTSANLNEAAGIIDQRVNGSGVAEAEV
TTQGGRNIIVEIPGPTSNSLVGLATRTAQLRFRTVACTSQTPGPCATGAAPTLPNDGPSLAPTDGATGNSKNRPGFLAKP
SAKPSQQPSQTASASESSSPTESPSESSSESPGAGSDDPAQMALDFMTDPGRAAIEAFNAYTCPTTKPVDDNPDKFLVTC
GTEAEGDAGVKYLLSPAAVEGTDLNSADAVVPSQSVSWIVQLSLGGEGKGVFADLSRAMSGTGQQFAVVLDGVVISSPVF
TGVIPNGDAQITGNFTKSSAQSLATSLKYGALPIAFDKEATSVEQIGASLAGDQLSAGILAGIIGLALVMLYCLLYYRGL
GLVVIASLVVAGVVTYSTVLLLSRTAGFTLTLPGIAGLIVAVGITADSFIVYFERIRDEMRDGKSMRVAVQAGWKRARGT
CVAADTVSLLAAIVLYIFATGVVKGFAFTLGISTVIDLAIFFWFTHPMVSVLGKYKFFNRGHKLSGLDAEALGVDRINIA
GGRA
>Mature_563_residues
ARKSYRPGRTLVVFFLVVAVSYGLVALGGTWKPELGLDLKGGTRIMMTATGNPTSANLNEAAGIIDQRVNGSGVAEAEVT
TQGGRNIIVEIPGPTSNSLVGLATRTAQLRFRTVACTSQTPGPCATGAAPTLPNDGPSLAPTDGATGNSKNRPGFLAKPS
AKPSQQPSQTASASESSSPTESPSESSSESPGAGSDDPAQMALDFMTDPGRAAIEAFNAYTCPTTKPVDDNPDKFLVTCG
TEAEGDAGVKYLLSPAAVEGTDLNSADAVVPSQSVSWIVQLSLGGEGKGVFADLSRAMSGTGQQFAVVLDGVVISSPVFT
GVIPNGDAQITGNFTKSSAQSLATSLKYGALPIAFDKEATSVEQIGASLAGDQLSAGILAGIIGLALVMLYCLLYYRGLG
LVVIASLVVAGVVTYSTVLLLSRTAGFTLTLPGIAGLIVAVGITADSFIVYFERIRDEMRDGKSMRVAVQAGWKRARGTC
VAADTVSLLAAIVLYIFATGVVKGFAFTLGISTVIDLAIFFWFTHPMVSVLGKYKFFNRGHKLSGLDAEALGVDRINIAG
GRA

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=205, Percent_Identity=29.7560975609756, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 58156; Mature: 58025

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKSYRPGRTLVVFFLVVAVSYGLVALGGTWKPELGLDLKGGTRIMMTATGNPTSANLN
CCCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCEEECCCCEEEEEECCCCCCCCHH
EAAGIIDQRVNGSGVAEAEVTTQGGRNIIVEIPGPTSNSLVGLATRTAQLRFRTVACTSQ
HHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEEHEEEEEEEEEEECCC
TPGPCATGAAPTLPNDGPSLAPTDGATGNSKNRPGFLAKPSAKPSQQPSQTASASESSSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCC
TESPSESSSESPGAGSDDPAQMALDFMTDPGRAAIEAFNAYTCPTTKPVDDNPDKFLVTC
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCEECCCCCCCCCCCCCEEEEE
GTEAEGDAGVKYLLSPAAVEGTDLNSADAVVPSQSVSWIVQLSLGGEGKGVFADLSRAMS
CCCCCCCCCCEEEECCCEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHC
GTGQQFAVVLDGVVISSPVFTGVIPNGDAQITGNFTKSSAQSLATSLKYGALPIAFDKEA
CCCCEEEEEECCCCCCCCCEEEECCCCCCEEECCCCHHHHHHHHHHHHCCCEEEEECCCH
TSVEQIGASLAGDQLSAGILAGIIGLALVMLYCLLYYRGLGLVVIASLVVAGVVTYSTVL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LLSRTAGFTLTLPGIAGLIVAVGITADSFIVYFERIRDEMRDGKSMRVAVQAGWKRARGT
HHHHCCCCEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCC
CVAADTVSLLAAIVLYIFATGVVKGFAFTLGISTVIDLAIFFWFTHPMVSVLGKYKFFNR
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GHKLSGLDAEALGVDRINIAGGRA
CCCCCCCCHHHCCCCEEECCCCCC
>Mature Secondary Structure 
ARKSYRPGRTLVVFFLVVAVSYGLVALGGTWKPELGLDLKGGTRIMMTATGNPTSANLN
CCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCEEECCCCEEEEEECCCCCCCCHH
EAAGIIDQRVNGSGVAEAEVTTQGGRNIIVEIPGPTSNSLVGLATRTAQLRFRTVACTSQ
HHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEEHEEEEEEEEEEECCC
TPGPCATGAAPTLPNDGPSLAPTDGATGNSKNRPGFLAKPSAKPSQQPSQTASASESSSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCC
TESPSESSSESPGAGSDDPAQMALDFMTDPGRAAIEAFNAYTCPTTKPVDDNPDKFLVTC
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCEECCCCCCCCCCCCCEEEEE
GTEAEGDAGVKYLLSPAAVEGTDLNSADAVVPSQSVSWIVQLSLGGEGKGVFADLSRAMS
CCCCCCCCCCEEEECCCEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHC
GTGQQFAVVLDGVVISSPVFTGVIPNGDAQITGNFTKSSAQSLATSLKYGALPIAFDKEA
CCCCEEEEEECCCCCCCCCEEEECCCCCCEEECCCCHHHHHHHHHHHHCCCEEEEECCCH
TSVEQIGASLAGDQLSAGILAGIIGLALVMLYCLLYYRGLGLVVIASLVVAGVVTYSTVL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LLSRTAGFTLTLPGIAGLIVAVGITADSFIVYFERIRDEMRDGKSMRVAVQAGWKRARGT
HHHHCCCCEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCC
CVAADTVSLLAAIVLYIFATGVVKGFAFTLGISTVIDLAIFFWFTHPMVSVLGKYKFFNR
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GHKLSGLDAEALGVDRINIAGGRA
CCCCCCCCHHHCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]