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The map label for this gene is ycdM [C]

Identifier: 119716540

GI number: 119716540

Start: 2462625

End: 2463575

Strand: Direct

Name: ycdM [C]

Synonym: Noca_2313

Alternate gene names: 119716540

Gene position: 2462625-2463575 (Clockwise)

Preceding gene: 119716539

Following gene: 119716542

Centisome position: 49.39

GC content: 74.03

Gene sequence:

>951_bases
TTGTCCGGGCCTGACAGGCTGGCGGGCATGGAGCTGCGCGTCTTCACCGAACCCCAGCAGGGAGCCACCTTCGACGACCT
GGTGCGGGTCGCCCAGGAGGCCGAACGGCTCGGCTTCGGGGCGTTCTTCCGGTCCGACCACTACCTCGGGATGGGCACCG
AGGGGCTGCCCGGCCCGAGCGACGCGTGGGTGACCCTGGCCGGCCTGGCCCGGGAGACCACGACCATCCGGCTCGGCACG
ATGATGACCAGCGCGACGTTCCGGCTGCCCGGGCCGCTGGCGATCGCGGTCGCCAACGTCGACCAGATGAGCGGCGGGCG
GGTCGAGCTCGGCATCGGCGCCGGCTGGTTCGAGGCCGAGCACACGGCGTACGGCATCCCGTTCCCCGGCACCGCCGAGC
GGTTCGACCGGTTCGAGGAGCAGCTCGCGATCATCACCGGGCTGTGGGCGACACCGGCGGGGGAGCGGTTCGACTTCGAG
GGGGTGCACTACCGGCTCGCGGACTCGCTGGCGCTGCCCAAGCCCGTGCAGCCGGCTCCGCCGGTGCTGGTCGGCGGTCT
CGGCAAGCGCCGTACCCCGGAGCTCGCGGCCCGCTACGCCGACGAGTTCAACCTGCCGTTCGTCGACGAGGCGACCACGG
CGGCGCAGTTCGCGCGGGTGCGCGAGGCGTGCGCCGAGCAGGGCCGCGACCCGGGCACGCTGACCTGGTCCAACGCGCTG
GTGCTGTGCGTCGGTGCCGACGAGGCCGAGCTCGGCCGTCGCGCGGCCGCGATCGGTCGCGAGCCCGCGGAGCTGCGCGT
CAACGGGCTCGCGGGGACGCCCGCCGAGGTGGTCGACAAGATCGGGCGGTACGCCGAGCTCGGCGCCGAGCGGGTCTACC
TGCAGGTCCTGGACCTGGCCGACCTCGACCACCTGCGGCTGGTGGCCGCGGAGGTCCTGCCGCACGTCTGA

Upstream 100 bases:

>100_bases
GACCTGGAGCCGCAGGGCGACGCGTTCTACCCCGAGTTCGACCGCAGCGAGTGGCGCGAGACCGCCCGCGAGCAGCACGA
CGGGTACGACCGCGTGGTGC

Downstream 100 bases:

>100_bases
GGCGTCCCGGGTGGGTGGCCGTCCTCAGGCGAGCGTCGAGGCGGAGAGCTCGGCCGCGATCTGGTGCGCCCAGTGGTCGA
TGTCGACCCAGTCGCGCAGG

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MSGPDRLAGMELRVFTEPQQGATFDDLVRVAQEAERLGFGAFFRSDHYLGMGTEGLPGPSDAWVTLAGLARETTTIRLGT
MMTSATFRLPGPLAIAVANVDQMSGGRVELGIGAGWFEAEHTAYGIPFPGTAERFDRFEEQLAIITGLWATPAGERFDFE
GVHYRLADSLALPKPVQPAPPVLVGGLGKRRTPELAARYADEFNLPFVDEATTAAQFARVREACAEQGRDPGTLTWSNAL
VLCVGADEAELGRRAAAIGREPAELRVNGLAGTPAEVVDKIGRYAELGAERVYLQVLDLADLDHLRLVAAEVLPHV

Sequences:

>Translated_316_residues
MSGPDRLAGMELRVFTEPQQGATFDDLVRVAQEAERLGFGAFFRSDHYLGMGTEGLPGPSDAWVTLAGLARETTTIRLGT
MMTSATFRLPGPLAIAVANVDQMSGGRVELGIGAGWFEAEHTAYGIPFPGTAERFDRFEEQLAIITGLWATPAGERFDFE
GVHYRLADSLALPKPVQPAPPVLVGGLGKRRTPELAARYADEFNLPFVDEATTAAQFARVREACAEQGRDPGTLTWSNAL
VLCVGADEAELGRRAAAIGREPAELRVNGLAGTPAEVVDKIGRYAELGAERVYLQVLDLADLDHLRLVAAEVLPHV
>Mature_315_residues
SGPDRLAGMELRVFTEPQQGATFDDLVRVAQEAERLGFGAFFRSDHYLGMGTEGLPGPSDAWVTLAGLARETTTIRLGTM
MTSATFRLPGPLAIAVANVDQMSGGRVELGIGAGWFEAEHTAYGIPFPGTAERFDRFEEQLAIITGLWATPAGERFDFEG
VHYRLADSLALPKPVQPAPPVLVGGLGKRRTPELAARYADEFNLPFVDEATTAAQFARVREACAEQGRDPGTLTWSNALV
LCVGADEAELGRRAAAIGREPAELRVNGLAGTPAEVVDKIGRYAELGAERVYLQVLDLADLDHLRLVAAEVLPHV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=248, Percent_Identity=29.8387096774194, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 33985; Mature: 33854

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPDRLAGMELRVFTEPQQGATFDDLVRVAQEAERLGFGAFFRSDHYLGMGTEGLPGPS
CCCCCHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCEECCCCCCCCCCC
DAWVTLAGLARETTTIRLGTMMTSATFRLPGPLAIAVANVDQMSGGRVELGIGAGWFEAE
CHHEEEEHHHCCCEEEEEEHHEEECEEECCCCEEEEEECHHHCCCCEEEEECCCCEEECC
HTAYGIPFPGTAERFDRFEEQLAIITGLWATPAGERFDFEGVHYRLADSLALPKPVQPAP
CCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHCCCCCCCCCCCC
PVLVGGLGKRRTPELAARYADEFNLPFVDEATTAAQFARVREACAEQGRDPGTLTWSNAL
CEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCEE
VLCVGADEAELGRRAAAIGREPAELRVNGLAGTPAEVVDKIGRYAELGAERVYLQVLDLA
EEEEECCHHHHHHHHHHHCCCCHHEEEECCCCCHHHHHHHHHHHHHHCHHHEEEEEECCC
DLDHLRLVAAEVLPHV
CCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SGPDRLAGMELRVFTEPQQGATFDDLVRVAQEAERLGFGAFFRSDHYLGMGTEGLPGPS
CCCCHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCEECCCCCCCCCCC
DAWVTLAGLARETTTIRLGTMMTSATFRLPGPLAIAVANVDQMSGGRVELGIGAGWFEAE
CHHEEEEHHHCCCEEEEEEHHEEECEEECCCCEEEEEECHHHCCCCEEEEECCCCEEECC
HTAYGIPFPGTAERFDRFEEQLAIITGLWATPAGERFDFEGVHYRLADSLALPKPVQPAP
CCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHCCCCCCCCCCCC
PVLVGGLGKRRTPELAARYADEFNLPFVDEATTAAQFARVREACAEQGRDPGTLTWSNAL
CEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCEE
VLCVGADEAELGRRAAAIGREPAELRVNGLAGTPAEVVDKIGRYAELGAERVYLQVLDLA
EEEEECCHHHHHHHHHHHCCCCHHEEEECCCCCHHHHHHHHHHHHHHCHHHEEEEEECCC
DLDHLRLVAAEVLPHV
CCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]