| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715785
Identifier: 119715785
GI number: 119715785
Start: 1642062
End: 1643333
Strand: Reverse
Name: 119715785
Synonym: Noca_1549
Alternate gene names: NA
Gene position: 1643333-1642062 (Counterclockwise)
Preceding gene: 119715786
Following gene: 119715770
Centisome position: 32.96
GC content: 71.38
Gene sequence:
>1272_bases GTGACGCAGACACCCGCGAGCGCCGCCACATCGACCACTCAGAGCGGAGCATGGTCGCCGTGGCGAACGGTCCTCGCCTT CGGCCTCGTCAGCTTGGCCGCCGACATGGTCTACGAAGGCATGCGGGCAACGGCCGGACCCTTCCTCGGCACCCTCGGCG CGTCTGCGCTCACCGTGGGCCTGGTCACCGGCGCCGGCGAAGGCATCGCGCTGGTACTCCGGCTGGTCACCGGCGTCTGG GCCGACCGGAGCCACCACCACTGGCGGCTGACCGTCCTCGGCTACGCCATGACCGCCGTCTGCGTCCCGCTGCTCGCGAT CACCCCGTTCATCGGCGTTGCCGGGCTCGCCGTCGCCGCAACCCTGATCCTGCTCGAGCGCACTGGAAAGGCCGTCCGCA GTCCGGCAAAGTCCGCCCTGCTTGCACGGATGGCGACCGCGACCGGCCGAGGCAAGGGATTCGCAGTCCACAAGGCCCTC GACCAGATAGGCGCCTTCTCCGGACCGCTCCTCCTGGCCGGAGTCGCGGCCGCGACCGGTGTGCTGTGGCCGGGCTTCGC GATCCTGGCGATTCCCGGGGCGCTCTCCCTCGTGCTGCTGGCACAGCTGCGCCTTCGGGCACCGATCGTGACCGAACCCG AGCGCGACGACGCGCCCCTTCCGGCAACGAGCGCGCTCGTGGCTGTCGGCAAGGCGGTGGTGGGCAGCGATCTGCCGCGC GCGTTCCACCTCTTCGCCCTGGCCACCGCGATGATGACTGCTGGCCTGATGACGTTCGGGGTCATCTCATTCCGCCTCGT ACAAGACGGGCTCCTGGCCGCAGCCGCCGTCCCCCTCGCGTACGCCCTCGCCATGGCCGTCGAGGCCATTGCCGCCCTCG GCACCGGGCACCTCTTCGACCGCCGAGGTGGTCGCGTCCTGCTGGCCGTCCCGGTTCTCGTCGCGATCGTGCCACTCTGC GTCTTCGCTACCCAACTGTGGCTGGTGCTCGTCGGCATCGTCGTGTGGGGCGTCGCCACCGGCATCCAGGACTCGACCGT CAAGGCCTACGTCGCCGACCTCGTCCCCGCGCCCCGCCGAGCCACCGCCTATGGGGTCTTCGCCGCCGTCCAAGGACTCG GTGCGCTCGCCGGCGGTGGCCTCGCCGGCGCGCTGGTCACCGGTCACGTCCCGATCCTGGCAGCCGTCATCGGCGGGCTT CAGGCGGTCGCGTTCATGCTCCTGATGCGCCTCACCCGTCGCGAGTCCGGGGCGCCGGCCGAGTCGCGCTGA
Upstream 100 bases:
>100_bases TGCACGCGACAGAGCGCCTCCTGGGCGGACCGCTCGCCTCGGCAGCCGTCGGCCCCCTCCGGGACCACTGGTCCAGCGGT TCCTGCGAGAATCTGTCCAC
Downstream 100 bases:
>100_bases CCGCCGCAGACCCCTCGTCGAGACCAAACCTTCTGTGCCACCGATCGGCAAAGGACGGACATGCGCGACAACCCCTGCGG CCACCGCGGCTCGTCAGCCC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MTQTPASAATSTTQSGAWSPWRTVLAFGLVSLAADMVYEGMRATAGPFLGTLGASALTVGLVTGAGEGIALVLRLVTGVW ADRSHHHWRLTVLGYAMTAVCVPLLAITPFIGVAGLAVAATLILLERTGKAVRSPAKSALLARMATATGRGKGFAVHKAL DQIGAFSGPLLLAGVAAATGVLWPGFAILAIPGALSLVLLAQLRLRAPIVTEPERDDAPLPATSALVAVGKAVVGSDLPR AFHLFALATAMMTAGLMTFGVISFRLVQDGLLAAAAVPLAYALAMAVEAIAALGTGHLFDRRGGRVLLAVPVLVAIVPLC VFATQLWLVLVGIVVWGVATGIQDSTVKAYVADLVPAPRRATAYGVFAAVQGLGALAGGGLAGALVTGHVPILAAVIGGL QAVAFMLLMRLTRRESGAPAESR
Sequences:
>Translated_423_residues MTQTPASAATSTTQSGAWSPWRTVLAFGLVSLAADMVYEGMRATAGPFLGTLGASALTVGLVTGAGEGIALVLRLVTGVW ADRSHHHWRLTVLGYAMTAVCVPLLAITPFIGVAGLAVAATLILLERTGKAVRSPAKSALLARMATATGRGKGFAVHKAL DQIGAFSGPLLLAGVAAATGVLWPGFAILAIPGALSLVLLAQLRLRAPIVTEPERDDAPLPATSALVAVGKAVVGSDLPR AFHLFALATAMMTAGLMTFGVISFRLVQDGLLAAAAVPLAYALAMAVEAIAALGTGHLFDRRGGRVLLAVPVLVAIVPLC VFATQLWLVLVGIVVWGVATGIQDSTVKAYVADLVPAPRRATAYGVFAAVQGLGALAGGGLAGALVTGHVPILAAVIGGL QAVAFMLLMRLTRRESGAPAESR >Mature_422_residues TQTPASAATSTTQSGAWSPWRTVLAFGLVSLAADMVYEGMRATAGPFLGTLGASALTVGLVTGAGEGIALVLRLVTGVWA DRSHHHWRLTVLGYAMTAVCVPLLAITPFIGVAGLAVAATLILLERTGKAVRSPAKSALLARMATATGRGKGFAVHKALD QIGAFSGPLLLAGVAAATGVLWPGFAILAIPGALSLVLLAQLRLRAPIVTEPERDDAPLPATSALVAVGKAVVGSDLPRA FHLFALATAMMTAGLMTFGVISFRLVQDGLLAAAAVPLAYALAMAVEAIAALGTGHLFDRRGGRVLLAVPVLVAIVPLCV FATQLWLVLVGIVVWGVATGIQDSTVKAYVADLVPAPRRATAYGVFAAVQGLGALAGGGLAGALVTGHVPILAAVIGGLQ AVAFMLLMRLTRRESGAPAESR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 42971; Mature: 42840
Theoretical pI: Translated: 10.87; Mature: 10.87
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTPASAATSTTQSGAWSPWRTVLAFGLVSLAADMVYEGMRATAGPFLGTLGASALTVG CCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LVTGAGEGIALVLRLVTGVWADRSHHHWRLTVLGYAMTAVCVPLLAITPFIGVAGLAVAA HHHCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLILLERTGKAVRSPAKSALLARMATATGRGKGFAVHKALDQIGAFSGPLLLAGVAAATG HHHHHHHHCHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH VLWPGFAILAIPGALSLVLLAQLRLRAPIVTEPERDDAPLPATSALVAVGKAVVGSDLPR HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH AFHLFALATAMMTAGLMTFGVISFRLVQDGLLAAAAVPLAYALAMAVEAIAALGTGHLFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH RRGGRVLLAVPVLVAIVPLCVFATQLWLVLVGIVVWGVATGIQDSTVKAYVADLVPAPRR CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH ATAYGVFAAVQGLGALAGGGLAGALVTGHVPILAAVIGGLQAVAFMLLMRLTRRESGAPA HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC ESR CCC >Mature Secondary Structure TQTPASAATSTTQSGAWSPWRTVLAFGLVSLAADMVYEGMRATAGPFLGTLGASALTVG CCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LVTGAGEGIALVLRLVTGVWADRSHHHWRLTVLGYAMTAVCVPLLAITPFIGVAGLAVAA HHHCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLILLERTGKAVRSPAKSALLARMATATGRGKGFAVHKALDQIGAFSGPLLLAGVAAATG HHHHHHHHCHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH VLWPGFAILAIPGALSLVLLAQLRLRAPIVTEPERDDAPLPATSALVAVGKAVVGSDLPR HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH AFHLFALATAMMTAGLMTFGVISFRLVQDGLLAAAAVPLAYALAMAVEAIAALGTGHLFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH RRGGRVLLAVPVLVAIVPLCVFATQLWLVLVGIVVWGVATGIQDSTVKAYVADLVPAPRR CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH ATAYGVFAAVQGLGALAGGGLAGALVTGHVPILAAVIGGLQAVAFMLLMRLTRRESGAPA HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC ESR CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]