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The map label for this gene is nodB [H]

Identifier: 119715786

GI number: 119715786

Start: 1643330

End: 1644064

Strand: Reverse

Name: nodB [H]

Synonym: Noca_1550

Alternate gene names: 119715786

Gene position: 1644064-1643330 (Counterclockwise)

Preceding gene: 119715787

Following gene: 119715785

Centisome position: 32.97

GC content: 69.25

Gene sequence:

>735_bases
ATGAGCAGCCGGCTTCAGGCCGCGCTGGGCGTCGGCGCACTCACCGTCGCGGCAGGCCCCGCCGTGACGGCGATCGGCCC
GCTCCGCCAACGTTGGATGCGTCGCCTGTCGGGAATCAGCAGCCGACCCCACATCGCACTCACCTTCGACGACGGGCCGG
ACCCGGTCAGTACACCTGCGTTCCTCGAGCTACTCGCCGAACGCCAGCGGCAGGCGACCTTCTTCGTGCTCGGCTCCCAG
GCCGTCGCCCATCCCGCGCTGGTCCAGCGGATCATTCAGGAAGGGCACGAACTGGCCATCCACGGATGGATACACCGCTG
CACCCTGACCGTGCCACCCGCGCGCCTGACCCGCGAGCTACGGGACGCGCAACGAGCCGTCGAAGACATCACCAACACCG
CCGTCAGCTGGTACCGACCGCCCTACGGCGTGCTCAACACCGAAGCCCTCCTCGCGTGCCGAAACCTCGACCTGACCCCC
GTGCTGTGGACCGCCTGGGGACGAGAATGGGAACGATCCGCGACCCCAACCACCATCGTCGCAACCGTCACACGCACCTT
GCGACCGGGCGGAACCATCCTGCTCCACGACACCGACCTCCACGCCCCCCACGGCGACTGGCGTCACACCCTGCACGCGA
CAGAGCGCCTCCTGGGCGGACCGCTCGCCTCGGCAGCCGTCGGCCCCCTCCGGGACCACTGGTCCAGCGGTTCCTGCGAG
AATCTGTCCACGTGA

Upstream 100 bases:

>100_bases
TGGCGGGCGCCCAAGTCGCCCCCCGCCACAACCGCCTCCCCATGGACGCCCCCGACCTGCTCGACGTGCTCACCGGCCGA
CATGCTGCAACTGTCGCCGC

Downstream 100 bases:

>100_bases
CGCAGACACCCGCGAGCGCCGCCACATCGACCACTCAGAGCGGAGCATGGTCGCCGTGGCGAACGGTCCTCGCCTTCGGC
CTCGTCAGCTTGGCCGCCGA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSSRLQAALGVGALTVAAGPAVTAIGPLRQRWMRRLSGISSRPHIALTFDDGPDPVSTPAFLELLAERQRQATFFVLGSQ
AVAHPALVQRIIQEGHELAIHGWIHRCTLTVPPARLTRELRDAQRAVEDITNTAVSWYRPPYGVLNTEALLACRNLDLTP
VLWTAWGREWERSATPTTIVATVTRTLRPGGTILLHDTDLHAPHGDWRHTLHATERLLGGPLASAAVGPLRDHWSSGSCE
NLST

Sequences:

>Translated_244_residues
MSSRLQAALGVGALTVAAGPAVTAIGPLRQRWMRRLSGISSRPHIALTFDDGPDPVSTPAFLELLAERQRQATFFVLGSQ
AVAHPALVQRIIQEGHELAIHGWIHRCTLTVPPARLTRELRDAQRAVEDITNTAVSWYRPPYGVLNTEALLACRNLDLTP
VLWTAWGREWERSATPTTIVATVTRTLRPGGTILLHDTDLHAPHGDWRHTLHATERLLGGPLASAAVGPLRDHWSSGSCE
NLST
>Mature_243_residues
SSRLQAALGVGALTVAAGPAVTAIGPLRQRWMRRLSGISSRPHIALTFDDGPDPVSTPAFLELLAERQRQATFFVLGSQA
VAHPALVQRIIQEGHELAIHGWIHRCTLTVPPARLTRELRDAQRAVEDITNTAVSWYRPPYGVLNTEALLACRNLDLTPV
LWTAWGREWERSATPTTIVATVTRTLRPGGTILLHDTDLHAPHGDWRHTLHATERLLGGPLASAAVGPLRDHWSSGSCEN
LST

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=160, Percent_Identity=30.625, Blast_Score=75, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6323338, Length=136, Percent_Identity=30.1470588235294, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 26660; Mature: 26528

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRLQAALGVGALTVAAGPAVTAIGPLRQRWMRRLSGISSRPHIALTFDDGPDPVSTPA
CCCHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHH
FLELLAERQRQATFFVLGSQAVAHPALVQRIIQEGHELAIHGWIHRCTLTVPPARLTREL
HHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCHHHHHHHH
RDAQRAVEDITNTAVSWYRPPYGVLNTEALLACRNLDLTPVLWTAWGREWERSATPTTIV
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCHHCCCCCCHHHH
ATVTRTLRPGGTILLHDTDLHAPHGDWRHTLHATERLLGGPLASAAVGPLRDHWSSGSCE
HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCHHHHCCCCCCCC
NLST
CCCC
>Mature Secondary Structure 
SSRLQAALGVGALTVAAGPAVTAIGPLRQRWMRRLSGISSRPHIALTFDDGPDPVSTPA
CCHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHH
FLELLAERQRQATFFVLGSQAVAHPALVQRIIQEGHELAIHGWIHRCTLTVPPARLTREL
HHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCHHHHHHHH
RDAQRAVEDITNTAVSWYRPPYGVLNTEALLACRNLDLTPVLWTAWGREWERSATPTTIV
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCHHCCCCCCHHHH
ATVTRTLRPGGTILLHDTDLHAPHGDWRHTLHATERLLGGPLASAAVGPLRDHWSSGSCE
HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCHHHHCCCCCCCC
NLST
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]