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The map label for this gene is nodV [H]

Identifier: 119715549

GI number: 119715549

Start: 1386030

End: 1386758

Strand: Reverse

Name: nodV [H]

Synonym: Noca_1313

Alternate gene names: 119715549

Gene position: 1386758-1386030 (Counterclockwise)

Preceding gene: 119715550

Following gene: 119715543

Centisome position: 27.81

GC content: 71.47

Gene sequence:

>729_bases
ATGGAAGCAGACGCAGCGGACCCGGTCAGCGGCGCGCTGGCCGCTGCGGCCGCCGCCCGCCGCGCCGCGGAGGAGGAGCT
CGAGCTGCTCCGCCAACGCATGGACAACGCCCAGGCGCTCGCGAACATGGGCGACTACGACTGGCACATCCCCACCGACA
CCAACCGGTGGAGCGACCAACTGTTCCGCATCTACGGGCACGAGCCGCAGTCGTTCAACGCGAGCTACGAGCGCTTCCTG
TCCCTGATCCATCCCGAGGACCGGGAGCGGATCCAGGCCATCCACCAGCACGCCTACGCCACCGGCGAGCCGTACGAGAT
GATCGAGCGCGTGGTGCGCCCCGACGGCGAGGTGCGGTACCTGCACTCCAACGGCCAGGTGATCATGGGTCCCGACGGGA
GTCCCGAGCGGATGCGGGGCACGTGCGTGGACGTCACCGAGCAGGTGCTCGCCGAGCGCGAGCGCGAGGCCGCGGCGACC
CACCTGAGCGAGGTGCGGCTGCGCCGCCGGCAGGCGGCCGAGATCAACGACAACGTCGTGCAGGGCCTCACCGCAGCGAT
GTACTCACTCGAGCTGGGCGACGCCGCGGGCTGCCAGGCCTACCTCGACCGGACGCTCGCCTCGGCGCGGACGATGATGC
ACGACCTGATCGATCCGCTCGCCGAGGGCGAGCTGGACGCCGGCGACCTGGTCCGGGCGGAGCCGGCGACGCTGGACGGG
ACCTCGTGA

Upstream 100 bases:

>100_bases
CGCTCGGCGTCACCGACTGACCGTCCAACCGCCCGGTCCGCGCCACGCCGCCACCGGCGATTCGCTCGCGTGGGCGCAGC
CCCGGGGTCACAATCGGCCC

Downstream 100 bases:

>100_bases
AGCCGGGTCGAGCCCCGACCCCTCAGGCCCAGAGCTGGCCCTCGAGGCGGTCCTCGGCCTCGTCGACGGTGCCCTCGTAG
GCACCGGTCGAGAGGTACTT

Product: PAS sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MEADAADPVSGALAAAAAARRAAEEELELLRQRMDNAQALANMGDYDWHIPTDTNRWSDQLFRIYGHEPQSFNASYERFL
SLIHPEDRERIQAIHQHAYATGEPYEMIERVVRPDGEVRYLHSNGQVIMGPDGSPERMRGTCVDVTEQVLAEREREAAAT
HLSEVRLRRRQAAEINDNVVQGLTAAMYSLELGDAAGCQAYLDRTLASARTMMHDLIDPLAEGELDAGDLVRAEPATLDG
TS

Sequences:

>Translated_242_residues
MEADAADPVSGALAAAAAARRAAEEELELLRQRMDNAQALANMGDYDWHIPTDTNRWSDQLFRIYGHEPQSFNASYERFL
SLIHPEDRERIQAIHQHAYATGEPYEMIERVVRPDGEVRYLHSNGQVIMGPDGSPERMRGTCVDVTEQVLAEREREAAAT
HLSEVRLRRRQAAEINDNVVQGLTAAMYSLELGDAAGCQAYLDRTLASARTMMHDLIDPLAEGELDAGDLVRAEPATLDG
TS
>Mature_242_residues
MEADAADPVSGALAAAAAARRAAEEELELLRQRMDNAQALANMGDYDWHIPTDTNRWSDQLFRIYGHEPQSFNASYERFL
SLIHPEDRERIQAIHQHAYATGEPYEMIERVVRPDGEVRYLHSNGQVIMGPDGSPERMRGTCVDVTEQVLAEREREAAAT
HLSEVRLRRRQAAEINDNVVQGLTAAMYSLELGDAAGCQAYLDRTLASARTMMHDLIDPLAEGELDAGDLVRAEPATLDG
TS

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process. NodV may function as a membrane-associated protein kinase that phosphorylates nodW in response to

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 PAS (PER-ARNT-SIM) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 26861; Mature: 26861

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS50112 PAS ; PS50113 PAC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEADAADPVSGALAAAAAARRAAEEELELLRQRMDNAQALANMGDYDWHIPTDTNRWSDQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
LFRIYGHEPQSFNASYERFLSLIHPEDRERIQAIHQHAYATGEPYEMIERVVRPDGEVRY
HHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEE
LHSNGQVIMGPDGSPERMRGTCVDVTEQVLAEREREAAATHLSEVRLRRRQAAEINDNVV
EECCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGLTAAMYSLELGDAAGCQAYLDRTLASARTMMHDLIDPLAEGELDAGDLVRAEPATLDG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TS
CC
>Mature Secondary Structure
MEADAADPVSGALAAAAAARRAAEEELELLRQRMDNAQALANMGDYDWHIPTDTNRWSDQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
LFRIYGHEPQSFNASYERFLSLIHPEDRERIQAIHQHAYATGEPYEMIERVVRPDGEVRY
HHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEE
LHSNGQVIMGPDGSPERMRGTCVDVTEQVLAEREREAAATHLSEVRLRRRQAAEINDNVV
EECCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGLTAAMYSLELGDAAGCQAYLDRTLASARTMMHDLIDPLAEGELDAGDLVRAEPATLDG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]