| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715511
Identifier: 119715511
GI number: 119715511
Start: 1349556
End: 1350215
Strand: Direct
Name: 119715511
Synonym: Noca_1275
Alternate gene names: NA
Gene position: 1349556-1350215 (Clockwise)
Preceding gene: 119715510
Following gene: 119715512
Centisome position: 27.07
GC content: 73.33
Gene sequence:
>660_bases ATGACCCGCGTCCGCATCGACCTCAACATCTCGTTGGACGGCTACGCGGCCGGCGAGCCGACCCCGGAGAACCCGATGGG GGAGGACTGGGAGCGCCTCACCGGCGCGTACGCCGCCACCCGCACGTTCCGCGAGCGGGTCCTCGGCGACACCAGTGGCG GTGGCACGACCGGCGTCGACGACGCCCATACCGCGGCGTACTTCGAGGGGGTGGGCGCGGAGATCATGGGCGCGGCGATG TTCGGGCTGCACTCGTTCCCGGACGACCCGGACTGGCAGGGCTGGTGGGGCGACCGGCCGCCGTTCGGCTGCCCGGTCTA CGTCTTGACCCACACGGCACCGCGGCCTTCGATCCGCATGGAGGGCGGCACGACGTTCCACTTCCGCAGCACCGCGATCG AGGAGGTGCTGGCCGAGGCGGTCGAGGCCGCCGGCGGCTCGGACGTGCGCGTCGGCGGGGGCGTCGGCACCGCCCGCGAC TTCCTCCGCGCCGGGCTGGTCGACCGGCTGCACGTCGCGATCGCCCCGATCCTGGTCGGCGGCGGTGCCCGGTTGTGGGA CGACCTGCGTGGCCTGGACCGCACCCACCGGGTGACGAGCGAGGTGGCGGAGAGCGGCACCGTCCACGTCACCTTCGAGC GACAGAGCACCGAGCGATGA
Upstream 100 bases:
>100_bases ACGTGCTGCACCTGTGGTTGGGCGAGCAGCGCACCCCGGCCGAGCGTCAGGCCGACCGGCTCGCCATCCACCTGACCCGC AGCCCCGGAGGGAACCCGAC
Downstream 100 bases:
>100_bases CGATCGAGCGCCGCCTCGCCCACGCCGGATTCACCCTGACCCGCGACTACCCCGTTCCCGTCGAGCGGGTCTGGGCTGCG TTCGCCGAGGAGGACCAGAA
Product: deaminase-reductase domain-containing protein
Products: NA
Alternate protein names: Deaminase-Reductase Domain-Containing Protein; Bifunctional Deaminase-Reductase Domain-Containing Protein; Bifunctional Deaminase-Reductase-Like; Dihydrofolate Reductase; Riboflavin Biosynthesis Protein; Dihydrofolate Reductase Protein; Deaminase/Reductase; Deaminase-Reductase; Riboflavin Biosynthesis Protein RibD Domain Protein; Bifunctional Deaminase-Reductase C-Terminal; Bifunctional Deaminase-Reductase-Like Protein; Riboflavin Biosynthesis Protein RibD
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MTRVRIDLNISLDGYAAGEPTPENPMGEDWERLTGAYAATRTFRERVLGDTSGGGTTGVDDAHTAAYFEGVGAEIMGAAM FGLHSFPDDPDWQGWWGDRPPFGCPVYVLTHTAPRPSIRMEGGTTFHFRSTAIEEVLAEAVEAAGGSDVRVGGGVGTARD FLRAGLVDRLHVAIAPILVGGGARLWDDLRGLDRTHRVTSEVAESGTVHVTFERQSTER
Sequences:
>Translated_219_residues MTRVRIDLNISLDGYAAGEPTPENPMGEDWERLTGAYAATRTFRERVLGDTSGGGTTGVDDAHTAAYFEGVGAEIMGAAM FGLHSFPDDPDWQGWWGDRPPFGCPVYVLTHTAPRPSIRMEGGTTFHFRSTAIEEVLAEAVEAAGGSDVRVGGGVGTARD FLRAGLVDRLHVAIAPILVGGGARLWDDLRGLDRTHRVTSEVAESGTVHVTFERQSTER >Mature_218_residues TRVRIDLNISLDGYAAGEPTPENPMGEDWERLTGAYAATRTFRERVLGDTSGGGTTGVDDAHTAAYFEGVGAEIMGAAMF GLHSFPDDPDWQGWWGDRPPFGCPVYVLTHTAPRPSIRMEGGTTFHFRSTAIEEVLAEAVEAAGGSDVRVGGGVGTARDF LRAGLVDRLHVAIAPILVGGGARLWDDLRGLDRTHRVTSEVAESGTVHVTFERQSTER
Specific function: Unknown
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23542; Mature: 23411
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRVRIDLNISLDGYAAGEPTPENPMGEDWERLTGAYAATRTFRERVLGDTSGGGTTGVD CCEEEEEEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC DAHTAAYFEGVGAEIMGAAMFGLHSFPDDPDWQGWWGDRPPFGCPVYVLTHTAPRPSIRM CHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE EGGTTFHFRSTAIEEVLAEAVEAAGGSDVRVGGGVGTARDFLRAGLVDRLHVAIAPILVG CCCCEEEEHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC GGARLWDDLRGLDRTHRVTSEVAESGTVHVTFERQSTER CCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCC >Mature Secondary Structure TRVRIDLNISLDGYAAGEPTPENPMGEDWERLTGAYAATRTFRERVLGDTSGGGTTGVD CEEEEEEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC DAHTAAYFEGVGAEIMGAAMFGLHSFPDDPDWQGWWGDRPPFGCPVYVLTHTAPRPSIRM CHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE EGGTTFHFRSTAIEEVLAEAVEAAGGSDVRVGGGVGTARDFLRAGLVDRLHVAIAPILVG CCCCEEEEHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC GGARLWDDLRGLDRTHRVTSEVAESGTVHVTFERQSTER CCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA