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The map label for this gene is cdaR [C]

Identifier: 119714364

GI number: 119714364

Start: 108849

End: 110423

Strand: Reverse

Name: cdaR [C]

Synonym: Noca_0097

Alternate gene names: 119714364

Gene position: 110423-108849 (Counterclockwise)

Preceding gene: 119714365

Following gene: 119714358

Centisome position: 2.21

GC content: 77.27

Gene sequence:

>1575_bases
GTGAGCGCCGCCTCGCCCGTCCCGCTCGTCGCCCTGCTGGCCCATGCCGACTGGCAGCAGGTGAGCGTGCTCGCGGCACC
GCCGGCGCCGACGCTGACCGTCGGCGGGGTCGCGATGGTGGCCGACATCCGCGGCCGGGCGGCCGACCTCGAGGGGAACC
TGCTGACCGTGCTGCAGCCGCCGCTGCGCGACGACTGGCAGATCGACGTCCTGATCCAGACGGCCGCCGCCGGCCGTGCC
TCGGCGCTGCTGATCGGCGACTCGTCCCCGCTCTCGCAGCCGTCGTCGGCCCTGGCCGCGCGCGTCGGCCTGACCGTGCT
CGGGGCGGACGACCCCCTGGCCGCCGCCCTGACCGCCCGGAGGCTGGTCGCCGAGGTGGAGCTGCACGTGTCCGACACCG
TGCTGCGGGTGACGGCCGCGGCCGCCCGGTCCGGAGAGGGCGTCGAGGACGTGATGAAGGCCGTCGGCTCGGTCCTGCAC
CGGCCCCTGGCCCTGGTGGCCGCCGGCGGCGACACCCTCCTGGGCTCCGACGTGGTCGCGGGGGAGGACCGCGAGACCGT
GGCCGGGACGCTCACCGCGGGCGCGGCCCGCTACCGCGCCACCCAGCGGGTCGAGCTCTCCGACTCGGCGCTGTTGATCG
CCCACCCGGTGCCGCCGACGACGGCGCGGGACGCCACGGTGTGGCTGGTCACCCGGCTCCCCCACGACCTGCCCGCCGAG
AGCGCCGCCGCGAGTGCGGCCCTCTCCGTGGCCGCGGCGGTGATCGGCCAGCGCGCCAGCCTGCGCCGGCTGGCCGTCGA
GCGGGACGCCCGGGCCCGCGCCTCACTGCTGGGCGAGCTGCTCAACGCCCCCGACGACGTGGCACCCACCACCCGGCGTC
GCGCGCTCGAGGCCGGGTGGCGCCTGGACGGCTGGCACCTCGGCATCCGGATCGACACCGGCCCCGAGGTCGACCCCGTG
GCCCAGCGTCCCGAGGTGATCGGCGCGCTCCAGGCGGAGGGGATGGACGCCGTCGTCGTGGAGCAGGGCGACGGGTGGTC
GGCCTGGATCACGTCCGAGGACGAGCCCCGCGGTGCCGACGTCGAGGCGCGAGCGGGCCAGATCCGCAGCGCGCAGCGCC
GGCTCGCGGCGACCACCCCGACCGCCGTGGGCGTCGGTCGCTACCACGCGGGCCCGCGGGGCGTCGCGCGGACCCTGGGC
GAGGCCGGGGAGGCGGCGCGGCTGGCGGCCGGCCGGGTCGCCAGCGGGCGGTTCCTGCACGTGGACCGCCTGGGCCTCGG
CCAGACGCTCCTGGCCTGGACCCGGACCGACACCTTCCAGCCAGCGGCCCGGTCCCTCCTCGCGCCGCTGGAGGGACAGC
CGGGCGACCTGCTGCACACGCTCACGACGTACCTCGACGAGGAGTCGTCGGTCTCGGAGACCGCCGCGATCCTGGGCATC
CACCGCAACACGGTCGCGCAACGGCTGGCCCGCATCCGGTCCCTGCTCGCCGTCGACCTCGCCGACCCCTCCGAACGGCT
GGCGCTGCACCTCGCCTGCCGGACGATCTGGATCCCGCCCTCAGACGTGGGCTAG

Upstream 100 bases:

>100_bases
TGCCGGCTCCCGCGTGGTGGCTCGCACCGGGCCGCCTCGACCGGGTGTCGCCGGCCGCGTTCGCCATCGACAGCCCGCCC
CTGCTCCTGGGCGGGCGGCC

Downstream 100 bases:

>100_bases
GAGGGCGCCCTCCGAGGGGGTGCCGTCGAACCGGATCGGGTCGACGTCGTAGCCGAAGTAGCGGGGCCCGACCAGCTCGA
TGCCCGCCGGCGTGTGCCAC

Product: regulator of polyketide synthase expression-like

Products: NA

Alternate protein names: Regulatory Protein; Transcriptional Regulator PucR Family; Regulator Of Polyketide Synthase Expression-Like; CdaR Family Transcriptional Regulator

Number of amino acids: Translated: 524; Mature: 523

Protein sequence:

>524_residues
MSAASPVPLVALLAHADWQQVSVLAAPPAPTLTVGGVAMVADIRGRAADLEGNLLTVLQPPLRDDWQIDVLIQTAAAGRA
SALLIGDSSPLSQPSSALAARVGLTVLGADDPLAAALTARRLVAEVELHVSDTVLRVTAAAARSGEGVEDVMKAVGSVLH
RPLALVAAGGDTLLGSDVVAGEDRETVAGTLTAGAARYRATQRVELSDSALLIAHPVPPTTARDATVWLVTRLPHDLPAE
SAAASAALSVAAAVIGQRASLRRLAVERDARARASLLGELLNAPDDVAPTTRRRALEAGWRLDGWHLGIRIDTGPEVDPV
AQRPEVIGALQAEGMDAVVVEQGDGWSAWITSEDEPRGADVEARAGQIRSAQRRLAATTPTAVGVGRYHAGPRGVARTLG
EAGEAARLAAGRVASGRFLHVDRLGLGQTLLAWTRTDTFQPAARSLLAPLEGQPGDLLHTLTTYLDEESSVSETAAILGI
HRNTVAQRLARIRSLLAVDLADPSERLALHLACRTIWIPPSDVG

Sequences:

>Translated_524_residues
MSAASPVPLVALLAHADWQQVSVLAAPPAPTLTVGGVAMVADIRGRAADLEGNLLTVLQPPLRDDWQIDVLIQTAAAGRA
SALLIGDSSPLSQPSSALAARVGLTVLGADDPLAAALTARRLVAEVELHVSDTVLRVTAAAARSGEGVEDVMKAVGSVLH
RPLALVAAGGDTLLGSDVVAGEDRETVAGTLTAGAARYRATQRVELSDSALLIAHPVPPTTARDATVWLVTRLPHDLPAE
SAAASAALSVAAAVIGQRASLRRLAVERDARARASLLGELLNAPDDVAPTTRRRALEAGWRLDGWHLGIRIDTGPEVDPV
AQRPEVIGALQAEGMDAVVVEQGDGWSAWITSEDEPRGADVEARAGQIRSAQRRLAATTPTAVGVGRYHAGPRGVARTLG
EAGEAARLAAGRVASGRFLHVDRLGLGQTLLAWTRTDTFQPAARSLLAPLEGQPGDLLHTLTTYLDEESSVSETAAILGI
HRNTVAQRLARIRSLLAVDLADPSERLALHLACRTIWIPPSDVG
>Mature_523_residues
SAASPVPLVALLAHADWQQVSVLAAPPAPTLTVGGVAMVADIRGRAADLEGNLLTVLQPPLRDDWQIDVLIQTAAAGRAS
ALLIGDSSPLSQPSSALAARVGLTVLGADDPLAAALTARRLVAEVELHVSDTVLRVTAAAARSGEGVEDVMKAVGSVLHR
PLALVAAGGDTLLGSDVVAGEDRETVAGTLTAGAARYRATQRVELSDSALLIAHPVPPTTARDATVWLVTRLPHDLPAES
AAASAALSVAAAVIGQRASLRRLAVERDARARASLLGELLNAPDDVAPTTRRRALEAGWRLDGWHLGIRIDTGPEVDPVA
QRPEVIGALQAEGMDAVVVEQGDGWSAWITSEDEPRGADVEARAGQIRSAQRRLAATTPTAVGVGRYHAGPRGVARTLGE
AGEAARLAAGRVASGRFLHVDRLGLGQTLLAWTRTDTFQPAARSLLAPLEGQPGDLLHTLTTYLDEESSVSETAAILGIH
RNTVAQRLARIRSLLAVDLADPSERLALHLACRTIWIPPSDVG

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54581; Mature: 54449

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAASPVPLVALLAHADWQQVSVLAAPPAPTLTVGGVAMVADIRGRAADLEGNLLTVLQP
CCCCCCCHHHHHHHCCCHHHEEEEECCCCCCEEECCEEEEEECCCCEECCCCCEEEEECC
PLRDDWQIDVLIQTAAAGRASALLIGDSSPLSQPSSALAARVGLTVLGADDPLAAALTAR
CCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHCEEEECCCCCHHHHHHHH
RLVAEVELHVSDTVLRVTAAAARSGEGVEDVMKAVGSVLHRPLALVAAGGDTLLGSDVVA
HHHHHHHEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEECCCEEC
GEDRETVAGTLTAGAARYRATQRVELSDSALLIAHPVPPTTARDATVWLVTRLPHDLPAE
CCCCCHHEEEHHHCHHHHHHCEEEEECCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCH
SAAASAALSVAAAVIGQRASLRRLAVERDARARASLLGELLNAPDDVAPTTRRRALEAGW
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
RLDGWHLGIRIDTGPEVDPVAQRPEVIGALQAEGMDAVVVEQGDGWSAWITSEDEPRGAD
CCCCEEEEEEECCCCCCCCHHCCCHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCCCC
VEARAGQIRSAQRRLAATTPTAVGVGRYHAGPRGVARTLGEAGEAARLAAGRVASGRFLH
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCEEE
VDRLGLGQTLLAWTRTDTFQPAARSLLAPLEGQPGDLLHTLTTYLDEESSVSETAAILGI
EECCCCCCHHEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHEE
HRNTVAQRLARIRSLLAVDLADPSERLALHLACRTIWIPPSDVG
HHHHHHHHHHHHHHHHHEECCCCHHHHEEEEEEEEEECCCCCCC
>Mature Secondary Structure 
SAASPVPLVALLAHADWQQVSVLAAPPAPTLTVGGVAMVADIRGRAADLEGNLLTVLQP
CCCCCCHHHHHHHCCCHHHEEEEECCCCCCEEECCEEEEEECCCCEECCCCCEEEEECC
PLRDDWQIDVLIQTAAAGRASALLIGDSSPLSQPSSALAARVGLTVLGADDPLAAALTAR
CCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHCEEEECCCCCHHHHHHHH
RLVAEVELHVSDTVLRVTAAAARSGEGVEDVMKAVGSVLHRPLALVAAGGDTLLGSDVVA
HHHHHHHEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEECCCEEC
GEDRETVAGTLTAGAARYRATQRVELSDSALLIAHPVPPTTARDATVWLVTRLPHDLPAE
CCCCCHHEEEHHHCHHHHHHCEEEEECCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCH
SAAASAALSVAAAVIGQRASLRRLAVERDARARASLLGELLNAPDDVAPTTRRRALEAGW
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
RLDGWHLGIRIDTGPEVDPVAQRPEVIGALQAEGMDAVVVEQGDGWSAWITSEDEPRGAD
CCCCEEEEEEECCCCCCCCHHCCCHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCCCC
VEARAGQIRSAQRRLAATTPTAVGVGRYHAGPRGVARTLGEAGEAARLAAGRVASGRFLH
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCEEE
VDRLGLGQTLLAWTRTDTFQPAARSLLAPLEGQPGDLLHTLTTYLDEESSVSETAAILGI
EECCCCCCHHEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHEE
HRNTVAQRLARIRSLLAVDLADPSERLALHLACRTIWIPPSDVG
HHHHHHHHHHHHHHHHHEECCCCHHHHEEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA