| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is attM [H]
Identifier: 119714358
GI number: 119714358
Start: 102208
End: 102804
Strand: Reverse
Name: attM [H]
Synonym: Noca_0090
Alternate gene names: 119714358
Gene position: 102804-102208 (Counterclockwise)
Preceding gene: 119714364
Following gene: 119714355
Centisome position: 2.06
GC content: 73.37
Gene sequence:
>597_bases ATGGAGCCGCGGCACCACCCGGCCGAGCAGCTCGAGCTCGTGGGCCTGTCCCCGGCCGACATCAGGTTCGTCGTCTACAC CCACCTGCACCACGACCACGCGGGCGGCGGCCGGCTGTTCCCCGACGCCGAGCACATCGCCCAACGCACCGAGCACCGGT GGGCACACTGCCCGGATCCGCCCGCCGCCGGCGGGTACGTCGCGACCGACATCGCCGGACCGAGGGCCTGGCGCCTGGCC GAGGGCGACTGGCACGTCTTCCGGGGCTTCTCGCTGATCTTCACCCCCGGCCACACCCCCGGCCACCAGTCGATCATGCT GTGGGACGTCCCCGACCTCGGCAACGTGATCCTGGCCGGGGATGCGATCAACACCCACGAGAACATCGACGGCGACCTCC CGCCCGGCATCGCCACCGACGCGCTGGCGGCGTCGTTCTCGATGCGCCGCCTCACCGCCCTCGCCGACGCCACCGACGCC GTCATCGTCGCGGGCCACGACCTGGAGCAGTTCCAGGCGATGGCCAAGGCACCCGAGCGGCTCCGGAGGACAGACCGGTG GCCGGGCCCGGACCGCCGGGGCGTCGCCCGCAGCTAG
Upstream 100 bases:
>100_bases ACGGGCGCCGCGGTCGAGGTCGGGGCAGCGGTCATGACGCGAAGGCCTCCAGGCCCACCCCGCCTGGGGCACGGAGCTGG CCGAGAGCACGCGACCCCGC
Downstream 100 bases:
>100_bases GCCCGCGTCAGCCGAGGTGCGGGTAGCGGTAGTCGGTCGGCGGGTCGAACGTCTCCTTGATGCTCCGCGGGGACGTCCAA CGCAGCAGGTTCGCGGCCGA
Product: beta-lactamase domain-containing protein
Products: NA
Alternate protein names: AHL-lactonase AttM [H]
Number of amino acids: Translated: 198; Mature: 198
Protein sequence:
>198_residues MEPRHHPAEQLELVGLSPADIRFVVYTHLHHDHAGGGRLFPDAEHIAQRTEHRWAHCPDPPAAGGYVATDIAGPRAWRLA EGDWHVFRGFSLIFTPGHTPGHQSIMLWDVPDLGNVILAGDAINTHENIDGDLPPGIATDALAASFSMRRLTALADATDA VIVAGHDLEQFQAMAKAPERLRRTDRWPGPDRRGVARS
Sequences:
>Translated_198_residues MEPRHHPAEQLELVGLSPADIRFVVYTHLHHDHAGGGRLFPDAEHIAQRTEHRWAHCPDPPAAGGYVATDIAGPRAWRLA EGDWHVFRGFSLIFTPGHTPGHQSIMLWDVPDLGNVILAGDAINTHENIDGDLPPGIATDALAASFSMRRLTALADATDA VIVAGHDLEQFQAMAKAPERLRRTDRWPGPDRRGVARS >Mature_198_residues MEPRHHPAEQLELVGLSPADIRFVVYTHLHHDHAGGGRLFPDAEHIAQRTEHRWAHCPDPPAAGGYVATDIAGPRAWRLA EGDWHVFRGFSLIFTPGHTPGHQSIMLWDVPDLGNVILAGDAINTHENIDGDLPPGIATDALAASFSMRRLTALADATDA VIVAGHDLEQFQAMAKAPERLRRTDRWPGPDRRGVARS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: =3.1.1.81 [H]
Molecular weight: Translated: 21706; Mature: 21706
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPRHHPAEQLELVGLSPADIRFVVYTHLHHDHAGGGRLFPDAEHIAQRTEHRWAHCPDP CCCCCCCHHHEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCC PAAGGYVATDIAGPRAWRLAEGDWHVFRGFSLIFTPGHTPGHQSIMLWDVPDLGNVILAG CCCCCEEEECCCCCCEEEECCCCEEEEECEEEEEECCCCCCCCEEEEEECCCCCCEEEEC DAINTHENIDGDLPPGIATDALAASFSMRRLTALADATDAVIVAGHDLEQFQAMAKAPER CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH LRRTDRWPGPDRRGVARS HHHCCCCCCCCCCCCCCC >Mature Secondary Structure MEPRHHPAEQLELVGLSPADIRFVVYTHLHHDHAGGGRLFPDAEHIAQRTEHRWAHCPDP CCCCCCCHHHEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCC PAAGGYVATDIAGPRAWRLAEGDWHVFRGFSLIFTPGHTPGHQSIMLWDVPDLGNVILAG CCCCCEEEECCCCCCEEEECCCCEEEEECEEEEEECCCCCCCCEEEEEECCCCCCEEEEC DAINTHENIDGDLPPGIATDALAASFSMRRLTALADATDAVIVAGHDLEQFQAMAKAPER CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH LRRTDRWPGPDRRGVARS HHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10786639; 11743194 [H]