| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119714365
Identifier: 119714365
GI number: 119714365
Start: 110420
End: 111496
Strand: Reverse
Name: 119714365
Synonym: Noca_0098
Alternate gene names: NA
Gene position: 111496-110420 (Counterclockwise)
Preceding gene: 119714372
Following gene: 119714364
Centisome position: 2.24
GC content: 76.97
Gene sequence:
>1077_bases ATGAGCCCTCCGGCTTCCCGGACCCTGCGCGCGGCCGACCTCGAGGCGCTGGCGGTCGGCCTGTGCCTGCTGGGCTCGGG CGGCGCCGGCGACCCGCAGCCCTTCGCCTCCGTGCTGCGCTCGCAGCTCGGTAACGGCGAGCTGGTGCTGCACGCACCCG GCGGTCTCGGGGGCGCGAGCGTCGTGCCGGTGGGGATGGTGGGGGCCACCAGCGTGTTCACCGAGAAGCTGCCCCACGGC GGTGAGTTCGGCGCGGCCGTCGCCGCGACCGGACGGTGGACCGGCGCGGCCCCGGACGCGGTGATGGGGATCGAGACGGC CGGCCTGAACGGCGTCACCGCGCTGGTGGCCGCGCTGCGCATGGGGCTGCCGTACGTCGACGCGGACCTGGCCGGACGCG GGCTGCCCCGGCTCGACCAGCTGACCTGGGTGACCGCGCAGCTGCCCCTGACCCCGTGCGCCCTCGCGTTCCCGGGCGGC CACACCTTGCTCGTCGACAGCGCCTCCGCCACCGAGGTGGAGAGGACGATCCGGGCCGCGCTGGCGGGAACCGGCGGCTG GGCGGCCCTCGCGCTCCCGCCGAGCCCCGCCGCCCTGCTGGACGAGACGGCCTGCGTGGGGACCCTGGGCCGGGCGCTCG AGCTCGGGCGCGCGCACGACTCGCTGCGCGTGCTGGCGGACGCCGCGGAGGTCGCGGAGGTGCTGGGGGGCGAGGTCCTC GGCGAGGGCCGCGTGCACGACGTGCTGCGGCACAGCGCGGGCGGCGGGCTGCAGCCCGAGTCGTCGGTGACGGTCCTCGA CCGGAACGGCCCCGTGCTGCGGATCGAGACGGAGAACGAGTTCTTGATGGTGCTCGTCGACGGCGAGCCCCGGGCCACGG TCCCCGACCTCATCTGCCTGCTGGACCGCCGGACGAACCGGCCGTTGGCGGTCGACGCCCTCCGGCGCGGCGACGAGGTG TTCGTGGTGGTCCTGCCGGCTCCCGCGTGGTGGCTCGCACCGGGCCGCCTCGACCGGGTGTCGCCGGCCGCGTTCGCCAT CGACAGCCCGCCCCTGCTCCTGGGCGGGCGGCCGTGA
Upstream 100 bases:
>100_bases CCTCGGACATATGTGCACATCGCTCGGTCGCGTCTCACGGGCAAGGCCACCTGCACACGGATCGCCCCCCGGACCGGCGG CCGGATGCGAGAATGCGGGC
Downstream 100 bases:
>100_bases GCGCCGCCTCGCCCGTCCCGCTCGTCGCCCTGCTGGCCCATGCCGACTGGCAGCAGGTGAGCGTGCTCGCGGCACCGCCG GCGCCGACGCTGACCGTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MSPPASRTLRAADLEALAVGLCLLGSGGAGDPQPFASVLRSQLGNGELVLHAPGGLGGASVVPVGMVGATSVFTEKLPHG GEFGAAVAATGRWTGAAPDAVMGIETAGLNGVTALVAALRMGLPYVDADLAGRGLPRLDQLTWVTAQLPLTPCALAFPGG HTLLVDSASATEVERTIRAALAGTGGWAALALPPSPAALLDETACVGTLGRALELGRAHDSLRVLADAAEVAEVLGGEVL GEGRVHDVLRHSAGGGLQPESSVTVLDRNGPVLRIETENEFLMVLVDGEPRATVPDLICLLDRRTNRPLAVDALRRGDEV FVVVLPAPAWWLAPGRLDRVSPAAFAIDSPPLLLGGRP
Sequences:
>Translated_358_residues MSPPASRTLRAADLEALAVGLCLLGSGGAGDPQPFASVLRSQLGNGELVLHAPGGLGGASVVPVGMVGATSVFTEKLPHG GEFGAAVAATGRWTGAAPDAVMGIETAGLNGVTALVAALRMGLPYVDADLAGRGLPRLDQLTWVTAQLPLTPCALAFPGG HTLLVDSASATEVERTIRAALAGTGGWAALALPPSPAALLDETACVGTLGRALELGRAHDSLRVLADAAEVAEVLGGEVL GEGRVHDVLRHSAGGGLQPESSVTVLDRNGPVLRIETENEFLMVLVDGEPRATVPDLICLLDRRTNRPLAVDALRRGDEV FVVVLPAPAWWLAPGRLDRVSPAAFAIDSPPLLLGGRP >Mature_357_residues SPPASRTLRAADLEALAVGLCLLGSGGAGDPQPFASVLRSQLGNGELVLHAPGGLGGASVVPVGMVGATSVFTEKLPHGG EFGAAVAATGRWTGAAPDAVMGIETAGLNGVTALVAALRMGLPYVDADLAGRGLPRLDQLTWVTAQLPLTPCALAFPGGH TLLVDSASATEVERTIRAALAGTGGWAALALPPSPAALLDETACVGTLGRALELGRAHDSLRVLADAAEVAEVLGGEVLG EGRVHDVLRHSAGGGLQPESSVTVLDRNGPVLRIETENEFLMVLVDGEPRATVPDLICLLDRRTNRPLAVDALRRGDEVF VVVLPAPAWWLAPGRLDRVSPAAFAIDSPPLLLGGRP
Specific function: Unknown
COG id: COG3535
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36533; Mature: 36402
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPPASRTLRAADLEALAVGLCLLGSGGAGDPQPFASVLRSQLGNGELVLHAPGGLGGAS CCCCCCCCEEHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCC VVPVGMVGATSVFTEKLPHGGEFGAAVAATGRWTGAAPDAVMGIETAGLNGVTALVAALR CCEECCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHH MGLPYVDADLAGRGLPRLDQLTWVTAQLPLTPCALAFPGGHTLLVDSASATEVERTIRAA HCCCEECHHHCCCCCCCCHHEEEEEEECCCCCEEEECCCCCEEEEECCCHHHHHHHHHHH LAGTGGWAALALPPSPAALLDETACVGTLGRALELGRAHDSLRVLADAAEVAEVLGGEVL HCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEE GEGRVHDVLRHSAGGGLQPESSVTVLDRNGPVLRIETENEFLMVLVDGEPRATVPDLICL CCCHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCHHHHHHH LDRRTNRPLAVDALRRGDEVFVVVLPAPAWWLAPGRLDRVSPAAFAIDSPPLLLGGRP HHCCCCCCEEHHHHHCCCEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCEEECCCC >Mature Secondary Structure SPPASRTLRAADLEALAVGLCLLGSGGAGDPQPFASVLRSQLGNGELVLHAPGGLGGAS CCCCCCCEEHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCC VVPVGMVGATSVFTEKLPHGGEFGAAVAATGRWTGAAPDAVMGIETAGLNGVTALVAALR CCEECCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHH MGLPYVDADLAGRGLPRLDQLTWVTAQLPLTPCALAFPGGHTLLVDSASATEVERTIRAA HCCCEECHHHCCCCCCCCHHEEEEEEECCCCCEEEECCCCCEEEEECCCHHHHHHHHHHH LAGTGGWAALALPPSPAALLDETACVGTLGRALELGRAHDSLRVLADAAEVAEVLGGEVL HCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEE GEGRVHDVLRHSAGGGLQPESSVTVLDRNGPVLRIETENEFLMVLVDGEPRATVPDLICL CCCHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCHHHHHHH LDRRTNRPLAVDALRRGDEVFVVVLPAPAWWLAPGRLDRVSPAAFAIDSPPLLLGGRP HHCCCCCCEEHHHHHCCCEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA