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The map label for this gene is ydcR [C]

Identifier: 119387085

GI number: 119387085

Start: 1571526

End: 1572773

Strand: Direct

Name: ydcR [C]

Synonym: Pden_4380

Alternate gene names: 119387085

Gene position: 1571526-1572773 (Clockwise)

Preceding gene: 119387083

Following gene: 119387087

Centisome position: 90.83

GC content: 71.07

Gene sequence:

>1248_bases
TTGGCGAAAAACGGTCACAGCGGGGTCATGTCCGATGCAACCGTTCCGACCATGCGCCCCGCTTTTGCCCCCTGGCTGTC
CCGCAGCAACGACGTGACCTCGGTCTTTCTGGCGGCGGGACAGGTACCCGATCTGGTCAACCTTGCCGGGGGCCTGCCCG
AACCCTCGGTCTGGCCGGTCGAGGAACTGGCCGGGCTGGCCGCCGAGGCGATCCGCAACCACCCGGACGAGACGCTGGGC
TATGGCCCGATCCCCGGCCTGCCGGCGCTGCGCGACCTGATCGCCGCGCGCTTCTCGGCCGGCGCGCTGCGGCTGTCGCG
CGAGAACGTGCTGATCACCACCGGCGGCATGCAGGCGCTGGAACTGATGGGCAAGGTGCTGTTGCAGCCGGGCGGGCTGG
TCGCGGCGCAAAGCCCGGCCTATCTGGGCGCGCTGGACGCCTGGATGCCGCATGCGCCGCGCTATCGCGCCATGCGGATC
GAGGCGAACGATTTCGACCCCCACGCCGCGCTGGCCGGGGCGCAATTCGCCTATACGGTGCCGAATTTCTCGAACCCCAG
CGGCCGGCTGGTGGCCCTGCCCGAGCGGCAGGCGCTGGTCGCCGCCGCCCATGCCACCGGCACCTGGCTGATCGAGGACG
ACCCATACGGCGCGCTTTACTATGAAGGCGAGCCCCTGCCCCGGCTGCTCGATCTGTCGGCGGCCGAGCGGCCCGGCCCC
TATGACGGGCCGGTGGTCTATATGGGCTCGCTCTCCAAGGAACTGGCGCCGGGGCTGCGCATCGGCTGGGTGATCGCCGC
GCCCGAGATGATCGCGGCGCTGGCCACCGCCAAGCAGGGCTCGGACATGTGTTCCAGCGGGCTGTCGCAGATGCTGGCGC
TGCGGGCGCTGCAGGCGGGCATGACCGACCGCATCCGCCCCGAGGTGCTGTCGATCTATCGCGCCCGGCGCGACGCGCTT
TGCGCCGCGATGCGACAGCACCTGTCCGCGGATCTGGACTGGCAGGTGCCGGTCGGCGGCATGTTCGTCTGGGCCACGGC
GCGCGATCCGCGGCTGGACACCGACCGGCTGCTGCATCATGCGATGGCGCAGGGGGTCTGCATTTCGCCCTCCAGCGTCT
TCGACCCCGAGGGGCTGGACCGTCGTTCGCTGCGGATCAACTTTACCCTGAACCCGCCCGAGCGGCTGGAGGAGGGCTGC
CGCCGCCTGGCCCGCGCCATCCGCGCCGCGCTGGCCGAGGTCGGTTGA

Upstream 100 bases:

>100_bases
ATGCCTGCATGGTCTTCCCCGTCGTGCCTTCGCCCCTGTCTGATATACATCGGCGCCGGGCACAAGCCGGGGGCGCCACG
GCGCCATCAGGCTTGCCCTG

Downstream 100 bases:

>100_bases
AGGCGGCCCGTCTTTTGGCCCGTCACACCGGCCAGACCAGCAGGATCAGCGGCACGCCGGTCAGCACGACCAGCGCCGAC
AGCGGCGCACCCAGCCGGGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MAKNGHSGVMSDATVPTMRPAFAPWLSRSNDVTSVFLAAGQVPDLVNLAGGLPEPSVWPVEELAGLAAEAIRNHPDETLG
YGPIPGLPALRDLIAARFSAGALRLSRENVLITTGGMQALELMGKVLLQPGGLVAAQSPAYLGALDAWMPHAPRYRAMRI
EANDFDPHAALAGAQFAYTVPNFSNPSGRLVALPERQALVAAAHATGTWLIEDDPYGALYYEGEPLPRLLDLSAAERPGP
YDGPVVYMGSLSKELAPGLRIGWVIAAPEMIAALATAKQGSDMCSSGLSQMLALRALQAGMTDRIRPEVLSIYRARRDAL
CAAMRQHLSADLDWQVPVGGMFVWATARDPRLDTDRLLHHAMAQGVCISPSSVFDPEGLDRRSLRINFTLNPPERLEEGC
RRLARAIRAALAEVG

Sequences:

>Translated_415_residues
MAKNGHSGVMSDATVPTMRPAFAPWLSRSNDVTSVFLAAGQVPDLVNLAGGLPEPSVWPVEELAGLAAEAIRNHPDETLG
YGPIPGLPALRDLIAARFSAGALRLSRENVLITTGGMQALELMGKVLLQPGGLVAAQSPAYLGALDAWMPHAPRYRAMRI
EANDFDPHAALAGAQFAYTVPNFSNPSGRLVALPERQALVAAAHATGTWLIEDDPYGALYYEGEPLPRLLDLSAAERPGP
YDGPVVYMGSLSKELAPGLRIGWVIAAPEMIAALATAKQGSDMCSSGLSQMLALRALQAGMTDRIRPEVLSIYRARRDAL
CAAMRQHLSADLDWQVPVGGMFVWATARDPRLDTDRLLHHAMAQGVCISPSSVFDPEGLDRRSLRINFTLNPPERLEEGC
RRLARAIRAALAEVG
>Mature_414_residues
AKNGHSGVMSDATVPTMRPAFAPWLSRSNDVTSVFLAAGQVPDLVNLAGGLPEPSVWPVEELAGLAAEAIRNHPDETLGY
GPIPGLPALRDLIAARFSAGALRLSRENVLITTGGMQALELMGKVLLQPGGLVAAQSPAYLGALDAWMPHAPRYRAMRIE
ANDFDPHAALAGAQFAYTVPNFSNPSGRLVALPERQALVAAAHATGTWLIEDDPYGALYYEGEPLPRLLDLSAAERPGPY
DGPVVYMGSLSKELAPGLRIGWVIAAPEMIAALATAKQGSDMCSSGLSQMLALRALQAGMTDRIRPEVLSIYRARRDALC
AAMRQHLSADLDWQVPVGGMFVWATARDPRLDTDRLLHHAMAQGVCISPSSVFDPEGLDRRSLRINFTLNPPERLEEGCR
RLARAIRAALAEVG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=404, Percent_Identity=24.2574257425743, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI33469970, Length=404, Percent_Identity=24.2574257425743, Blast_Score=112, Evalue=9e-25,
Organism=Escherichia coli, GI1787710, Length=396, Percent_Identity=27.2727272727273, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1790797, Length=409, Percent_Identity=23.4718826405868, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI48994949, Length=238, Percent_Identity=27.7310924369748, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788722, Length=385, Percent_Identity=24.9350649350649, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321000, Length=180, Percent_Identity=28.3333333333333, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21356535, Length=403, Percent_Identity=24.317617866005, Blast_Score=107, Evalue=2e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 44475; Mature: 44343

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNGHSGVMSDATVPTMRPAFAPWLSRSNDVTSVFLAAGQVPDLVNLAGGLPEPSVWPV
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHEEECCCCCHHHHHHCCCCCCCCCCH
EELAGLAAEAIRNHPDETLGYGPIPGLPALRDLIAARFSAGALRLSRENVLITTGGMQAL
HHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHH
ELMGKVLLQPGGLVAAQSPAYLGALDAWMPHAPRYRAMRIEANDFDPHAALAGAQFAYTV
HHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHCCCEEEEEC
PNFSNPSGRLVALPERQALVAAAHATGTWLIEDDPYGALYYEGEPLPRLLDLSAAERPGP
CCCCCCCCCEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCHHHCCCCCCCCCC
YDGPVVYMGSLSKELAPGLRIGWVIAAPEMIAALATAKQGSDMCSSGLSQMLALRALQAG
CCCCEEEECCCCHHHCCCCEEEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
MTDRIRPEVLSIYRARRDALCAAMRQHLSADLDWQVPVGGMFVWATARDPRLDTDRLLHH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEECCCCCCCHHHHHHH
AMAQGVCISPSSVFDPEGLDRRSLRINFTLNPPERLEEGCRRLARAIRAALAEVG
HHHCCEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKNGHSGVMSDATVPTMRPAFAPWLSRSNDVTSVFLAAGQVPDLVNLAGGLPEPSVWPV
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHEEECCCCCHHHHHHCCCCCCCCCCH
EELAGLAAEAIRNHPDETLGYGPIPGLPALRDLIAARFSAGALRLSRENVLITTGGMQAL
HHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHH
ELMGKVLLQPGGLVAAQSPAYLGALDAWMPHAPRYRAMRIEANDFDPHAALAGAQFAYTV
HHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHCCCEEEEEC
PNFSNPSGRLVALPERQALVAAAHATGTWLIEDDPYGALYYEGEPLPRLLDLSAAERPGP
CCCCCCCCCEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCHHHCCCCCCCCCC
YDGPVVYMGSLSKELAPGLRIGWVIAAPEMIAALATAKQGSDMCSSGLSQMLALRALQAG
CCCCEEEECCCCHHHCCCCEEEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
MTDRIRPEVLSIYRARRDALCAAMRQHLSADLDWQVPVGGMFVWATARDPRLDTDRLLHH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEECCCCCCCHHHHHHH
AMAQGVCISPSSVFDPEGLDRRSLRINFTLNPPERLEEGCRRLARAIRAALAEVG
HHHCCEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]