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The map label for this gene is nrdF [H]

Identifier: 119387083

GI number: 119387083

Start: 1569481

End: 1570470

Strand: Direct

Name: nrdF [H]

Synonym: Pden_4378

Alternate gene names: 119387083

Gene position: 1569481-1570470 (Clockwise)

Preceding gene: 119387082

Following gene: 119387085

Centisome position: 90.72

GC content: 62.53

Gene sequence:

>990_bases
ATGAAAGGGGTTCTTCGGATGAAGGATCATGCCATGCGGACGCCCGTGCGCGCGATCAACTGGAACCGGCTGGAGGACGA
GAAGGACCTGGAGGTCTGGAACCGGCTGACCGTCAATTTCTGGCTGCCCGAAAAGGTGCCGCTGTCGAACGACGTGCAAA
GCTGGGCCACGCTGCGCCCCGAAGAGCGCGAGCTGACCATCCGGGTCTTTACCGGGCTGACGCTCTTGGACACCATCCAG
AACACCGTGGGCGCGCCCGCGATGATGCCCGATGCGCTGACCCCGCATGAGGAGGCGGTCTTGTCGAACATCGCCTTCAT
GGAGGCGGTGCATGCGCGCAGCTATTCCTCGATCTTCTCGACGCTGTGCCTGACGCCCGAGGTGGACGCGGCCTTTCGCT
GGGCCGAGGAGAACCCGCATCTGCAACAGAAGGCGCGGCTGGTTCTGGAGGAATACAAGGCCGGCTCGGATCCGCTGAAG
CGCAAGATCGCCAGCGTGTTCCTGGAAAGCTTCATGTTCTATTCCGGCTTCTACCTGCCGATGTATTGGTCGAGCCGCGC
CAAGCTGACCAATACCGCCGACCTGATCCGCCTGATCATCCGCGACGAGGCGGTGCATGGCTATTACATCGGCTACAAAT
ACCAGCGCGGGCTGGAGCGGCTGGGCGAGGCCGAGCGCGCGGCGCTGAAGGACTTTGCCTTTTCGCTGATCTTCGATCTC
TACGACATCGAGGCGAAATACACCGCCGAGCTATACGACGGCATCGGGCTGACCGAAGACGTGAAGTCCTTCCTGCATTA
CAACGCCAACAAGGCCCTGCAGAACCTGGGCTACGAGGCGCTGTTCCCGCCGCAGGCCTGCGAGGTCAACCCGGCGATCC
TGGCCGCCCTGTCCCCCGACAGCGAGAACCACGACTTCTTCAGCGGCTCGGGGTCGAGCTATGTCATCGGCAAGGCGGTC
GCGACCGAGGACGAGGACTGGGATTTCTAG

Upstream 100 bases:

>100_bases
CAGACCGCGCTGGAAGGCACCGAGGTGCAGGGCTGCGTTTCCTGCACGCTTTGATCGTGGGGGCCTTGGGCCCCCACACC
CCGAGGGTATTTGAGAAACG

Downstream 100 bases:

>100_bases
GCTTGCGCCTTGCGCGCCAGCCGCTGCGCGATGGCCGAGCAGACCAGCAATTGCGTCATGTGATAGATCATCACCGGCAG
CACGATCGCACCCACCGCCG

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKGVLRMKDHAMRTPVRAINWNRLEDEKDLEVWNRLTVNFWLPEKVPLSNDVQSWATLRPEERELTIRVFTGLTLLDTIQ
NTVGAPAMMPDALTPHEEAVLSNIAFMEAVHARSYSSIFSTLCLTPEVDAAFRWAEENPHLQQKARLVLEEYKAGSDPLK
RKIASVFLESFMFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLERLGEAERAALKDFAFSLIFDL
YDIEAKYTAELYDGIGLTEDVKSFLHYNANKALQNLGYEALFPPQACEVNPAILAALSPDSENHDFFSGSGSSYVIGKAV
ATEDEDWDF

Sequences:

>Translated_329_residues
MKGVLRMKDHAMRTPVRAINWNRLEDEKDLEVWNRLTVNFWLPEKVPLSNDVQSWATLRPEERELTIRVFTGLTLLDTIQ
NTVGAPAMMPDALTPHEEAVLSNIAFMEAVHARSYSSIFSTLCLTPEVDAAFRWAEENPHLQQKARLVLEEYKAGSDPLK
RKIASVFLESFMFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLERLGEAERAALKDFAFSLIFDL
YDIEAKYTAELYDGIGLTEDVKSFLHYNANKALQNLGYEALFPPQACEVNPAILAALSPDSENHDFFSGSGSSYVIGKAV
ATEDEDWDF
>Mature_329_residues
MKGVLRMKDHAMRTPVRAINWNRLEDEKDLEVWNRLTVNFWLPEKVPLSNDVQSWATLRPEERELTIRVFTGLTLLDTIQ
NTVGAPAMMPDALTPHEEAVLSNIAFMEAVHARSYSSIFSTLCLTPEVDAAFRWAEENPHLQQKARLVLEEYKAGSDPLK
RKIASVFLESFMFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLERLGEAERAALKDFAFSLIFDL
YDIEAKYTAELYDGIGLTEDVKSFLHYNANKALQNLGYEALFPPQACEVNPAILAALSPDSENHDFFSGSGSSYVIGKAV
ATEDEDWDF

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1789031, Length=315, Percent_Identity=72.3809523809524, Blast_Score=479, Evalue=1e-136,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 37477; Mature: 37477

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00368 RIBORED_SMALL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGVLRMKDHAMRTPVRAINWNRLEDEKDLEVWNRLTVNFWLPEKVPLSNDVQSWATLRP
CCCCHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHEEEEEEECCCCCCCCCCHHHHHHCCC
EERELTIRVFTGLTLLDTIQNTVGAPAMMPDALTPHEEAVLSNIAFMEAVHARSYSSIFS
CCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TLCLTPEVDAAFRWAEENPHLQQKARLVLEEYKAGSDPLKRKIASVFLESFMFYSGFYLP
HHHCCCCCHHHHEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEE
MYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLERLGEAERAALKDFAFSLIFDL
EEECCCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDIEAKYTAELYDGIGLTEDVKSFLHYNANKALQNLGYEALFPPQACEVNPAILAALSPD
HHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC
SENHDFFSGSGSSYVIGKAVATEDEDWDF
CCCCCCCCCCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MKGVLRMKDHAMRTPVRAINWNRLEDEKDLEVWNRLTVNFWLPEKVPLSNDVQSWATLRP
CCCCHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHEEEEEEECCCCCCCCCCHHHHHHCCC
EERELTIRVFTGLTLLDTIQNTVGAPAMMPDALTPHEEAVLSNIAFMEAVHARSYSSIFS
CCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TLCLTPEVDAAFRWAEENPHLQQKARLVLEEYKAGSDPLKRKIASVFLESFMFYSGFYLP
HHHCCCCCHHHHEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEE
MYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLERLGEAERAALKDFAFSLIFDL
EEECCCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDIEAKYTAELYDGIGLTEDVKSFLHYNANKALQNLGYEALFPPQACEVNPAILAALSPD
HHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC
SENHDFFSGSGSSYVIGKAVATEDEDWDF
CCCCCCCCCCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]