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The map label for this gene is cydA [H]

Identifier: 119386717

GI number: 119386717

Start: 1154774

End: 1156177

Strand: Direct

Name: cydA [H]

Synonym: Pden_4010

Alternate gene names: 119386717

Gene position: 1154774-1156177 (Clockwise)

Preceding gene: 119386716

Following gene: 119386718

Centisome position: 66.75

GC content: 66.31

Gene sequence:

>1404_bases
ATGTTCGAACATCTGGATGCCGTCATTCTGGCCCGCGTGCAATTCGCGTTCACGGTCTCGTTCCACTTCGTCTTTCCGGC
CTTCTCGATCGGGCTGGCCAGCTATCTCATGGTGCTCGAGGCGCTGTGGCTGCGCACGGGCAGGGGGGTCTATGCCAACC
TGTTCCGCTACTGGCTGAAGATCTTCGCGGTGGTCTTCGGCATGGGCGTCGTCTCGGGCGTGGTGATGTCCTATCAGTTC
GGCACCAACTGGTCGGTCTTCTCGGAAAAGGCGGGGCCGGTGATAGGGCCGCTGATGGCCTATGAGGTGATGACCGCCTT
CTTCCTCGAGGCGGGCTTCTTGGGCGTGATGCTGTTCGGGATGAACAAGGTCGGCAGGGGACTGCATTTCCTTGCCACCT
GCATGGTGGCCCTGGGCACCATGATCTCGGCCACATGGATCCTTGCGGTAAACAGCTGGATGCAGACGCCGGCGGGGCAC
CTGATCAACGAACAGGGACAGTTCGTGCCGGGACCGTCCTGGTGGGCGATCGTCTTTACCGCAAGCTTTCCCTACCGGCT
GGTGCATACGGTCATCGCGGCCTACCTGACCACGGCGCTGGCGGTGGGCGGGGTCGGCGCATGGCACCTGCTGCGCGACC
GCGCCAATCCCGGCGCGCGCAAGATGTTTTCGATGGCGATGTGGATGGCGGCCGTCGTCGCGCCGATCCAGATCTTCGTC
GGCGATGCGCATGGGCTGAACACGCTGGAGCACCAGCCCGCCAAGATCCTGGCCATCGAGGGCCATTACGAGCCCAGTCC
CGACGGCGCCTCGCTGATCCTGTTCGGCATCCCCGACAGCGAAGCGCGGCGCGTGGACTATGCCATCGAGGTGCCGAAGC
TCGGCTCGCTGATCCTGAAGCACGACCCGAACGCCCCCCTGCCGGGGCTGAACGATTTCCCGCGCGAGGACTGGCCGCCC
GTCGGCATCGTGTTCTGGTCCTTCCGCATCATGGTCGGGCTGGGCTTCGCCATGCTGGGGCTGGGGCTCTGGAGCCTCTG
GGCGCGCTGGCGCGGCACCCTCTACGACCGGCGCTGGCTGCATCGGGCGGCGCTTGTCATGGGGCCTTCGGGCTTCGTCG
CCGTGATCGCGGGCTGGATCACCACCGAGGTGGGACGCCAGCCCTTTACCGTCTACGGCCTGATGCGCACCGCGGAATCG
CATTCGCCGCTTGCCGCGCCCGCCGTGGCGGCCTCACTGATCGCCTTTGTCGTGGTCTATTTCTTCGCCTTCGGGGCGGG
GATCTATTACCTGCTGCGGCTGATGGCAAAGCCGCCGCAGCCCGGCGAAACCCAGCCGCCCAGCCGACCGCAGCGCGCCG
CCGGCATCACGCCCGCCGCGGTCGGCGCCGGCACGGAGCATTGA

Upstream 100 bases:

>100_bases
TCCGCTCCTGCCGCTTGACTACTACGACCGGATCAGCGGCACGCCCGCCGCGAAATCCATTCCCGTTCGCATCGCCACCT
GATCCCCCGGAGGGGCAGCC

Downstream 100 bases:

>100_bases
CATGGAAAGCATCGATCTGACCGTCGTCTGGGCGCTGATCATCGGCTTCGCGGTCTTTGCCTATGTGGTGATGGACGGGT
TCGACCTGGGTATCGGCATC

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MFEHLDAVILARVQFAFTVSFHFVFPAFSIGLASYLMVLEALWLRTGRGVYANLFRYWLKIFAVVFGMGVVSGVVMSYQF
GTNWSVFSEKAGPVIGPLMAYEVMTAFFLEAGFLGVMLFGMNKVGRGLHFLATCMVALGTMISATWILAVNSWMQTPAGH
LINEQGQFVPGPSWWAIVFTASFPYRLVHTVIAAYLTTALAVGGVGAWHLLRDRANPGARKMFSMAMWMAAVVAPIQIFV
GDAHGLNTLEHQPAKILAIEGHYEPSPDGASLILFGIPDSEARRVDYAIEVPKLGSLILKHDPNAPLPGLNDFPREDWPP
VGIVFWSFRIMVGLGFAMLGLGLWSLWARWRGTLYDRRWLHRAALVMGPSGFVAVIAGWITTEVGRQPFTVYGLMRTAES
HSPLAAPAVAASLIAFVVVYFFAFGAGIYYLLRLMAKPPQPGETQPPSRPQRAAGITPAAVGAGTEH

Sequences:

>Translated_467_residues
MFEHLDAVILARVQFAFTVSFHFVFPAFSIGLASYLMVLEALWLRTGRGVYANLFRYWLKIFAVVFGMGVVSGVVMSYQF
GTNWSVFSEKAGPVIGPLMAYEVMTAFFLEAGFLGVMLFGMNKVGRGLHFLATCMVALGTMISATWILAVNSWMQTPAGH
LINEQGQFVPGPSWWAIVFTASFPYRLVHTVIAAYLTTALAVGGVGAWHLLRDRANPGARKMFSMAMWMAAVVAPIQIFV
GDAHGLNTLEHQPAKILAIEGHYEPSPDGASLILFGIPDSEARRVDYAIEVPKLGSLILKHDPNAPLPGLNDFPREDWPP
VGIVFWSFRIMVGLGFAMLGLGLWSLWARWRGTLYDRRWLHRAALVMGPSGFVAVIAGWITTEVGRQPFTVYGLMRTAES
HSPLAAPAVAASLIAFVVVYFFAFGAGIYYLLRLMAKPPQPGETQPPSRPQRAAGITPAAVGAGTEH
>Mature_467_residues
MFEHLDAVILARVQFAFTVSFHFVFPAFSIGLASYLMVLEALWLRTGRGVYANLFRYWLKIFAVVFGMGVVSGVVMSYQF
GTNWSVFSEKAGPVIGPLMAYEVMTAFFLEAGFLGVMLFGMNKVGRGLHFLATCMVALGTMISATWILAVNSWMQTPAGH
LINEQGQFVPGPSWWAIVFTASFPYRLVHTVIAAYLTTALAVGGVGAWHLLRDRANPGARKMFSMAMWMAAVVAPIQIFV
GDAHGLNTLEHQPAKILAIEGHYEPSPDGASLILFGIPDSEARRVDYAIEVPKLGSLILKHDPNAPLPGLNDFPREDWPP
VGIVFWSFRIMVGLGFAMLGLGLWSLWARWRGTLYDRRWLHRAALVMGPSGFVAVIAGWITTEVGRQPFTVYGLMRTAES
HSPLAAPAVAASLIAFVVVYFFAFGAGIYYLLRLMAKPPQPGETQPPSRPQRAAGITPAAVGAGTEH

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=520, Percent_Identity=28.8461538461538, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI1787212, Length=316, Percent_Identity=33.8607594936709, Blast_Score=210, Evalue=1e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51101; Mature: 51101

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]