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The map label for this gene is ydeP [H]

Identifier: 119386716

GI number: 119386716

Start: 1152491

End: 1154755

Strand: Direct

Name: ydeP [H]

Synonym: Pden_4009

Alternate gene names: 119386716

Gene position: 1152491-1154755 (Clockwise)

Preceding gene: 119386713

Following gene: 119386717

Centisome position: 66.61

GC content: 65.12

Gene sequence:

>2265_bases
ATGTCCGATCGCAAACCCGTCTACAAGGCCTATCACCATCCGGCCGGCGGCTGGGGGGCGGCGGCGGCGACGGCCAAGGT
GCTGATGGAGCAAAGCGTGCTGACCAAGGGGTCGCGCGCACTGCTGTCGATGAACCAGCCGGGCGGGTTCAAATGCCCCA
GCTGCGCCTTTCCCGATGCCGATTGCCGCAAGAAGCTGGAGTTCTGCGAGAACGGCGCCAAGGCGCTGGCGCATGAGGCG
ACGAAATTCCGCGTCACCCGCGATTTCTTCGCCCAGCACAGCGTCACCGAGCTGATGCAGCAATCGGATTACTGGCTGGA
GATGCAGGGCCGACTGACCGAGCCGATGCGCTATGACCCCCGGACCGACCATTACGTCCCGATCGGTTGGGGCGATGCCT
TCGCGCTGATCGGGCAGCACCTGCGCGCGCTGGAAAGCCCCCACCAGGCCGAATTCTATACCTCTGGCCGCACGCCGAAC
GAGGCGGCATTCCTGTATTCCGTCTTCGTGCGCGAATTCGGCACCAACAATTTCCCCGACTGCTCGAACATGTGCCACGA
ACCGACCAGCCGCGGCCTGCCGCCCGCCATCGGCGTCGGCAAGGGCACCGTGGTCATGGCCGATTTCGAACATGCCGAGG
CGATCTTCATCATCGGCCAGAACACCGGCACCAACAGCCCGCGCATGATGACCAACCTGGTCGAGGCGCGCAAACGCGGC
GTGCCCATCGTCACCATCAACCCGATGCCGGAACGCGCGCTGATCCAGTTCACCGAACCGCAGGACGTGATCCAGATGGC
GACCTTCGGGTCCACGAAGATCTCCAGCGAATTCGTGCATGTGAAGATCGGCGGCGACCTGGCGATCCTGAAGGGCATGA
TGAAGGTGATCTTCGAGCGCGACGCGGCGGGCGAAGCGGCCATCGACTGGCCCTTCGTCGAGGCCCATACCACGGGCCTG
GACGCCGTGCGGGCCGAGATCGTGGCGCTGGACTGGGCGGCGCTGGAGCAGCATTCCGGCATCGAAGAGGCGCAGATCCG
GCGCCTGGCGGAAATCTACATCCGCTCGAACGCGACGATGATCTGCTACGGCATGGGGGTGACGCAACACCAGCAGGGGT
CGCAACTGGTGCAGCAGATCGTCAACCTTTTGCTGCTGCGCGGCAATTTCGGCAAGCCGGGGGCGGGGATCTCGCCCATT
CGGGGGCACTCGAACGTGCAGGGCGACCGCACCGTGGGCATCGACGAAAGGCCGTCGCAGGACTACCTGGACCGGCTCGC
CGCCGTCTTCGGCTTCGAGCCTCCGCGCAAGTACGGCCATCATGCCGTCGAATCCGTCGAGGCCATGCTGCGCGGCGAGG
CCAAGGTCTTTATCGGCCTGGGCGGAAACTTTGCCCGGGCCATGTCGGATACCGAGCGGACCTATGCCGCGATGCGCAAG
CTGAACCTGAGCGTCGGCATCGCCACCAAGCTGAACCGGGGCCACCTTGTCCACGGCAGGGACGCGCTGATGCTGCCGGT
GGTGGCGCGCTCCGAGATCATCCGCACCCTGGCCGGCGAACAGTTCGTCACCATCGAGGACGCCATGTCCAACGTCACCG
CCTCGCGCGGGGTGCTGGAGCCCGCCGGCCCCGACTGCCTGCCCGAGGTCGAGATCGTTTGCCGCATGGCCCAGGCAACG
CTGCCGGACAGCCGCACGCCCTGGGGTGAATATATCAACGACTACGGGGCGATACGCGACAGGATCGCCGATGTCTATCC
GGCGATCTACGCGGATTTCAACAGCCGCATCAAGAATCCCCACGGCTTCCATCTCGAGGTGCTGCCGCGCCGGCGCATCT
GGGCGACGCCGAACGGAAAGGCGAATTTCCTGTTGCTGCCGGGACTGGCGGTCAACGATCCGGTGGACGATCCGCAGATG
CTCCGGCTGTCCACCATCCGCTCGCACGATCAGTTCAATACCACGATCTACAGCTACAACGATCGCTATCGCGGCATCTA
CAACGACCGGATGGTGCTGTTCATGAACGCGGGCGACATCGCCGCGCGCGGGTTGCGCGACGGCCAGCAGGTCGCGCTGG
ACACGATCAGCCCGGATGGGTTGCCGCGGCGCGTCGCGGGGTTGACGGTGGTGGAATATCCGATGCCGCGCGGGTCGGTC
GCGGGATATTATCCGGAACTCAATCCGCTCCTGCCGCTTGACTACTACGACCGGATCAGCGGCACGCCCGCCGCGAAATC
CATTCCCGTTCGCATCGCCACCTGA

Upstream 100 bases:

>100_bases
TTGTCCAAATCGGGCGGACAAACTGTCCATTGAAATCAATGGCCTTGTCTGTTGCGATCCAAGGGCAAGGCCAATCTGAC
CCTTCAGGAGAAACGCGCCG

Downstream 100 bases:

>100_bases
TCCCCCGGAGGGGCAGCCATGTTCGAACATCTGGATGCCGTCATTCTGGCCCGCGTGCAATTCGCGTTCACGGTCTCGTT
CCACTTCGTCTTTCCGGCCT

Product: oxidoreductase alpha (molybdopterin) subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 754; Mature: 753

Protein sequence:

>754_residues
MSDRKPVYKAYHHPAGGWGAAAATAKVLMEQSVLTKGSRALLSMNQPGGFKCPSCAFPDADCRKKLEFCENGAKALAHEA
TKFRVTRDFFAQHSVTELMQQSDYWLEMQGRLTEPMRYDPRTDHYVPIGWGDAFALIGQHLRALESPHQAEFYTSGRTPN
EAAFLYSVFVREFGTNNFPDCSNMCHEPTSRGLPPAIGVGKGTVVMADFEHAEAIFIIGQNTGTNSPRMMTNLVEARKRG
VPIVTINPMPERALIQFTEPQDVIQMATFGSTKISSEFVHVKIGGDLAILKGMMKVIFERDAAGEAAIDWPFVEAHTTGL
DAVRAEIVALDWAALEQHSGIEEAQIRRLAEIYIRSNATMICYGMGVTQHQQGSQLVQQIVNLLLLRGNFGKPGAGISPI
RGHSNVQGDRTVGIDERPSQDYLDRLAAVFGFEPPRKYGHHAVESVEAMLRGEAKVFIGLGGNFARAMSDTERTYAAMRK
LNLSVGIATKLNRGHLVHGRDALMLPVVARSEIIRTLAGEQFVTIEDAMSNVTASRGVLEPAGPDCLPEVEIVCRMAQAT
LPDSRTPWGEYINDYGAIRDRIADVYPAIYADFNSRIKNPHGFHLEVLPRRRIWATPNGKANFLLLPGLAVNDPVDDPQM
LRLSTIRSHDQFNTTIYSYNDRYRGIYNDRMVLFMNAGDIAARGLRDGQQVALDTISPDGLPRRVAGLTVVEYPMPRGSV
AGYYPELNPLLPLDYYDRISGTPAAKSIPVRIAT

Sequences:

>Translated_754_residues
MSDRKPVYKAYHHPAGGWGAAAATAKVLMEQSVLTKGSRALLSMNQPGGFKCPSCAFPDADCRKKLEFCENGAKALAHEA
TKFRVTRDFFAQHSVTELMQQSDYWLEMQGRLTEPMRYDPRTDHYVPIGWGDAFALIGQHLRALESPHQAEFYTSGRTPN
EAAFLYSVFVREFGTNNFPDCSNMCHEPTSRGLPPAIGVGKGTVVMADFEHAEAIFIIGQNTGTNSPRMMTNLVEARKRG
VPIVTINPMPERALIQFTEPQDVIQMATFGSTKISSEFVHVKIGGDLAILKGMMKVIFERDAAGEAAIDWPFVEAHTTGL
DAVRAEIVALDWAALEQHSGIEEAQIRRLAEIYIRSNATMICYGMGVTQHQQGSQLVQQIVNLLLLRGNFGKPGAGISPI
RGHSNVQGDRTVGIDERPSQDYLDRLAAVFGFEPPRKYGHHAVESVEAMLRGEAKVFIGLGGNFARAMSDTERTYAAMRK
LNLSVGIATKLNRGHLVHGRDALMLPVVARSEIIRTLAGEQFVTIEDAMSNVTASRGVLEPAGPDCLPEVEIVCRMAQAT
LPDSRTPWGEYINDYGAIRDRIADVYPAIYADFNSRIKNPHGFHLEVLPRRRIWATPNGKANFLLLPGLAVNDPVDDPQM
LRLSTIRSHDQFNTTIYSYNDRYRGIYNDRMVLFMNAGDIAARGLRDGQQVALDTISPDGLPRRVAGLTVVEYPMPRGSV
AGYYPELNPLLPLDYYDRISGTPAAKSIPVRIAT
>Mature_753_residues
SDRKPVYKAYHHPAGGWGAAAATAKVLMEQSVLTKGSRALLSMNQPGGFKCPSCAFPDADCRKKLEFCENGAKALAHEAT
KFRVTRDFFAQHSVTELMQQSDYWLEMQGRLTEPMRYDPRTDHYVPIGWGDAFALIGQHLRALESPHQAEFYTSGRTPNE
AAFLYSVFVREFGTNNFPDCSNMCHEPTSRGLPPAIGVGKGTVVMADFEHAEAIFIIGQNTGTNSPRMMTNLVEARKRGV
PIVTINPMPERALIQFTEPQDVIQMATFGSTKISSEFVHVKIGGDLAILKGMMKVIFERDAAGEAAIDWPFVEAHTTGLD
AVRAEIVALDWAALEQHSGIEEAQIRRLAEIYIRSNATMICYGMGVTQHQQGSQLVQQIVNLLLLRGNFGKPGAGISPIR
GHSNVQGDRTVGIDERPSQDYLDRLAAVFGFEPPRKYGHHAVESVEAMLRGEAKVFIGLGGNFARAMSDTERTYAAMRKL
NLSVGIATKLNRGHLVHGRDALMLPVVARSEIIRTLAGEQFVTIEDAMSNVTASRGVLEPAGPDCLPEVEIVCRMAQATL
PDSRTPWGEYINDYGAIRDRIADVYPAIYADFNSRIKNPHGFHLEVLPRRRIWATPNGKANFLLLPGLAVNDPVDDPQML
RLSTIRSHDQFNTTIYSYNDRYRGIYNDRMVLFMNAGDIAARGLRDGQQVALDTISPDGLPRRVAGLTVVEYPMPRGSVA
GYYPELNPLLPLDYYDRISGTPAAKSIPVRIAT

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=755, Percent_Identity=48.2119205298013, Blast_Score=732, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=565, Percent_Identity=24.2477876106195, Blast_Score=145, Evalue=9e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 83279; Mature: 83148

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRKPVYKAYHHPAGGWGAAAATAKVLMEQSVLTKGSRALLSMNQPGGFKCPSCAFPDA
CCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCH
DCRKKLEFCENGAKALAHEATKFRVTRDFFAQHSVTELMQQSDYWLEMQGRLTEPMRYDP
HHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
RTDHYVPIGWGDAFALIGQHLRALESPHQAEFYTSGRTPNEAAFLYSVFVREFGTNNFPD
CCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCC
CSNMCHEPTSRGLPPAIGVGKGTVVMADFEHAEAIFIIGQNTGTNSPRMMTNLVEARKRG
HHHHHCCCHHCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC
VPIVTINPMPERALIQFTEPQDVIQMATFGSTKISSEFVHVKIGGDLAILKGMMKVIFER
CCEEEECCCCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC
DAAGEAAIDWPFVEAHTTGLDAVRAEIVALDWAALEQHSGIEEAQIRRLAEIYIRSNATM
CCCCCCEECCCEEECCCCCHHHHHHHHHEEHHHHHHHHCCCCHHHHHHHHHHHEECCCEE
ICYGMGVTQHQQGSQLVQQIVNLLLLRGNFGKPGAGISPIRGHSNVQGDRTVGIDERPSQ
EEEECCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCH
DYLDRLAAVFGFEPPRKYGHHAVESVEAMLRGEAKVFIGLGGNFARAMSDTERTYAAMRK
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
LNLSVGIATKLNRGHLVHGRDALMLPVVARSEIIRTLAGEQFVTIEDAMSNVTASRGVLE
HCCEEEEEEECCCCCEEECCCCEEEHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCC
PAGPDCLPEVEIVCRMAQATLPDSRTPWGEYINDYGAIRDRIADVYPAIYADFNSRIKNP
CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HGFHLEVLPRRRIWATPNGKANFLLLPGLAVNDPVDDPQMLRLSTIRSHDQFNTTIYSYN
CCCEEEEECCCEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEC
DRYRGIYNDRMVLFMNAGDIAARGLRDGQQVALDTISPDGLPRRVAGLTVVEYPMPRGSV
CCCCCEECCCEEEEEECCCHHHHCCCCCCEEEEECCCCCCCCHHHHCCEEEECCCCCCCC
AGYYPELNPLLPLDYYDRISGTPAAKSIPVRIAT
CCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEECC
>Mature Secondary Structure 
SDRKPVYKAYHHPAGGWGAAAATAKVLMEQSVLTKGSRALLSMNQPGGFKCPSCAFPDA
CCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCH
DCRKKLEFCENGAKALAHEATKFRVTRDFFAQHSVTELMQQSDYWLEMQGRLTEPMRYDP
HHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
RTDHYVPIGWGDAFALIGQHLRALESPHQAEFYTSGRTPNEAAFLYSVFVREFGTNNFPD
CCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCC
CSNMCHEPTSRGLPPAIGVGKGTVVMADFEHAEAIFIIGQNTGTNSPRMMTNLVEARKRG
HHHHHCCCHHCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC
VPIVTINPMPERALIQFTEPQDVIQMATFGSTKISSEFVHVKIGGDLAILKGMMKVIFER
CCEEEECCCCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC
DAAGEAAIDWPFVEAHTTGLDAVRAEIVALDWAALEQHSGIEEAQIRRLAEIYIRSNATM
CCCCCCEECCCEEECCCCCHHHHHHHHHEEHHHHHHHHCCCCHHHHHHHHHHHEECCCEE
ICYGMGVTQHQQGSQLVQQIVNLLLLRGNFGKPGAGISPIRGHSNVQGDRTVGIDERPSQ
EEEECCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCH
DYLDRLAAVFGFEPPRKYGHHAVESVEAMLRGEAKVFIGLGGNFARAMSDTERTYAAMRK
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
LNLSVGIATKLNRGHLVHGRDALMLPVVARSEIIRTLAGEQFVTIEDAMSNVTASRGVLE
HCCEEEEEEECCCCCEEECCCCEEEHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCC
PAGPDCLPEVEIVCRMAQATLPDSRTPWGEYINDYGAIRDRIADVYPAIYADFNSRIKNP
CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HGFHLEVLPRRRIWATPNGKANFLLLPGLAVNDPVDDPQMLRLSTIRSHDQFNTTIYSYN
CCCEEEEECCCEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEC
DRYRGIYNDRMVLFMNAGDIAARGLRDGQQVALDTISPDGLPRRVAGLTVVEYPMPRGSV
CCCCCEECCCEEEEEECCCHHHHCCCCCCEEEEECCCCCCCCHHHHCCEEEECCCCCCCC
AGYYPELNPLLPLDYYDRISGTPAAKSIPVRIAT
CCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]