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The map label for this gene is appB [H]

Identifier: 119386718

GI number: 119386718

Start: 1156179

End: 1157183

Strand: Direct

Name: appB [H]

Synonym: Pden_4011

Alternate gene names: 119386718

Gene position: 1156179-1157183 (Clockwise)

Preceding gene: 119386717

Following gene: 119386719

Centisome position: 66.83

GC content: 65.47

Gene sequence:

>1005_bases
ATGGAAAGCATCGATCTGACCGTCGTCTGGGCGCTGATCATCGGCTTCGCGGTCTTTGCCTATGTGGTGATGGACGGGTT
CGACCTGGGTATCGGCATCCTGTTCCCGACGCTGAAGGTCGGCGAGGAACGCGACCAGGCGATGAACTCGATCGCACCTG
TCTGGGACGGCAACGAGACATGGCTGGTGCTGGGCGGCGGCGGGCTGTTCGCGGCCTTTCCGCTGGCCTATGCGATCATC
CTGCCGGCCACCTATCCGCTGATGATCGCCATGCTGCTGGGCCTGATCTTTCGCGGCGTCGCCTTCGAGTTCCGCTGGCG
CGACCCGCGCCACCGCGCCTTCTGGGACCTGGCCTTCACGGGTGGTTCGGTCGTGGCGGCGCTGTCGCAGGGCATCGCGC
TCGGCGCCATCCTCCAGGGCATCCGGGTCGAGAACGGGGCCTATGCCGGGGGCTGGCTTGACTGGCTCAGCCCGTTCAGC
CTGCTGACCGGGATCGCGCTGCTGACGGGCTATGCGGCGCTTGGCGCGGCCTGGCTCAACTGGAAGACCGAAGGCGGCGC
GCAGAGCCACGCCCGCCGCATGGTGCATCTGCTTGCGCCCGCCATGATCGCCATGCTGATCGCGGTCAGCGCCGCGACGC
CCTTTCTCAACTACGACTATTGGCGGCGCTGGTTCGACTTTCCAGGGGTGCTGCTGACGGCGCAGGTGCCGCTTCTGGTT
GCGATCTGCGCCTTGGTGCTGTTCCGCAGCCTGATCGCCGGCGCCGAGCGGCTGCCCTTCCTGATGCTTCTCGCCCTGTT
CCTGTTGTGCTTCATCGGGCTGGGCATCAGCATCTTTCCCTATGTCGTGCCCCGCTCGGTGACGATCTGGGATGCGGCGG
CACCGCTGCGCAGCCAGTCCTTCATGCTGGCAGGCGCGATGTTCATCATCCCGATCATCCTGATCTACACGGGATGGGCC
TATTGGGTGTTCCGCGGCAAGGTCGGAACACACGGCTATCATTGA

Upstream 100 bases:

>100_bases
GCAAAGCCGCCGCAGCCCGGCGAAACCCAGCCGCCCAGCCGACCGCAGCGCGCCGCCGGCATCACGCCCGCCGCGGTCGG
CGCCGGCACGGAGCATTGAC

Downstream 100 bases:

>100_bases
TGGCGGGCGAGGCACCCCTGTGGAAGCGGCTGGCCTGGATGGCCGCGATCTGGACCGCCAGCGTTCTGGCCCTCGGCCTT
GTGGCCATGGCCATCCGATG

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit II [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MESIDLTVVWALIIGFAVFAYVVMDGFDLGIGILFPTLKVGEERDQAMNSIAPVWDGNETWLVLGGGGLFAAFPLAYAII
LPATYPLMIAMLLGLIFRGVAFEFRWRDPRHRAFWDLAFTGGSVVAALSQGIALGAILQGIRVENGAYAGGWLDWLSPFS
LLTGIALLTGYAALGAAWLNWKTEGGAQSHARRMVHLLAPAMIAMLIAVSAATPFLNYDYWRRWFDFPGVLLTAQVPLLV
AICALVLFRSLIAGAERLPFLMLLALFLLCFIGLGISIFPYVVPRSVTIWDAAAPLRSQSFMLAGAMFIIPIILIYTGWA
YWVFRGKVGTHGYH

Sequences:

>Translated_334_residues
MESIDLTVVWALIIGFAVFAYVVMDGFDLGIGILFPTLKVGEERDQAMNSIAPVWDGNETWLVLGGGGLFAAFPLAYAII
LPATYPLMIAMLLGLIFRGVAFEFRWRDPRHRAFWDLAFTGGSVVAALSQGIALGAILQGIRVENGAYAGGWLDWLSPFS
LLTGIALLTGYAALGAAWLNWKTEGGAQSHARRMVHLLAPAMIAMLIAVSAATPFLNYDYWRRWFDFPGVLLTAQVPLLV
AICALVLFRSLIAGAERLPFLMLLALFLLCFIGLGISIFPYVVPRSVTIWDAAAPLRSQSFMLAGAMFIIPIILIYTGWA
YWVFRGKVGTHGYH
>Mature_334_residues
MESIDLTVVWALIIGFAVFAYVVMDGFDLGIGILFPTLKVGEERDQAMNSIAPVWDGNETWLVLGGGGLFAAFPLAYAII
LPATYPLMIAMLLGLIFRGVAFEFRWRDPRHRAFWDLAFTGGSVVAALSQGIALGAILQGIRVENGAYAGGWLDWLSPFS
LLTGIALLTGYAALGAAWLNWKTEGGAQSHARRMVHLLAPAMIAMLIAVSAATPFLNYDYWRRWFDFPGVLLTAQVPLLV
AICALVLFRSLIAGAERLPFLMLLALFLLCFIGLGISIFPYVVPRSVTIWDAAAPLRSQSFMLAGAMFIIPIILIYTGWA
YWVFRGKVGTHGYH

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=375, Percent_Identity=32.2666666666667, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1786954, Length=371, Percent_Identity=31.5363881401617, Blast_Score=144, Evalue=8e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36568; Mature: 36568

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESIDLTVVWALIIGFAVFAYVVMDGFDLGIGILFPTLKVGEERDQAMNSIAPVWDGNET
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHCCCHHHHHHHHCCCCCCCCCE
WLVLGGGGLFAAFPLAYAIILPATYPLMIAMLLGLIFRGVAFEFRWRDPRHRAFWDLAFT
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHEEEEEEC
GGSVVAALSQGIALGAILQGIRVENGAYAGGWLDWLSPFSLLTGIALLTGYAALGAAWLN
CCHHHHHHHCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WKTEGGAQSHARRMVHLLAPAMIAMLIAVSAATPFLNYDYWRRWFDFPGVLLTAQVPLLV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
AICALVLFRSLIAGAERLPFLMLLALFLLCFIGLGISIFPYVVPRSVTIWDAAAPLRSQS
HHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCH
FMLAGAMFIIPIILIYTGWAYWVFRGKVGTHGYH
HHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCC
>Mature Secondary Structure
MESIDLTVVWALIIGFAVFAYVVMDGFDLGIGILFPTLKVGEERDQAMNSIAPVWDGNET
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHCCCHHHHHHHHCCCCCCCCCE
WLVLGGGGLFAAFPLAYAIILPATYPLMIAMLLGLIFRGVAFEFRWRDPRHRAFWDLAFT
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHEEEEEEC
GGSVVAALSQGIALGAILQGIRVENGAYAGGWLDWLSPFSLLTGIALLTGYAALGAAWLN
CCHHHHHHHCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WKTEGGAQSHARRMVHLLAPAMIAMLIAVSAATPFLNYDYWRRWFDFPGVLLTAQVPLLV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
AICALVLFRSLIAGAERLPFLMLLALFLLCFIGLGISIFPYVVPRSVTIWDAAAPLRSQS
HHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCH
FMLAGAMFIIPIILIYTGWAYWVFRGKVGTHGYH
HHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]