| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is 119386630
Identifier: 119386630
GI number: 119386630
Start: 1058292
End: 1060046
Strand: Direct
Name: 119386630
Synonym: Pden_3923
Alternate gene names: NA
Gene position: 1058292-1060046 (Clockwise)
Preceding gene: 119386629
Following gene: 119386631
Centisome position: 61.17
GC content: 71.0
Gene sequence:
>1755_bases ATGACCGCATCCGCCTGCCTGGCCCCAGAAGGCCCGGCGCGTGTCCTGCAAGGAGCCGACGGCATGGAAGACTTCGTTCC CAGACTGGATCCCGGACTGGACGCGGCGCGGCAGGTCCGCGCCGGGCAGGCCCTGGAAACCGAAGCACCGCTGGACCCTG CCGAGGCGGTAATCGGCGACACGGCGGATGGCACCGGCCGGGGCCGCCGCATCTATGGCGCATGCAGCGTCGAGACCTAT CGTGCCGCCGGGGCGCTGCATGCCGCCCATCGCGATGCCGGCGGTTTTCTGGATGCGGTGGATCGTTTCGCCACGCCGGA TTTCTGGCGCCGGGACGGGGCGGTGAAATCCTGGATCTATGACCGGCAGGCGGTGGAGCATGCGCCGGGCCGGGACATGG ATTCGGTGCGGGTGTTCTATCATGCCGGGCATGGCCGGATGGACGAGGACGGGATCTTCCACCTGCCGATGGGGGCGCTG TGGACCGGGGCGGATGCCTGCCTGACCTCCGACCGGATGCGGCTTGGCTCGGGTGCGCTGCGCTACCTGTTCTGGTCCAC CAGCCAGTCGCTGCGGATCGGGCCCGGCTACAGCCCGCTGCACAGTTGGGTGCGGGCCAACCAGGGCTTGCGCATGCTGT TCGGCTTCGACTCGATCTGCTGGGATTCCGGCCGCTATGGCGCGAATTTCTGGCACCATTGGCAGATGGGCAAGCCCTTC GCGCAGGCATGGCTGGACGGGGCCTGGGACATCGCACCCGATCAGAGCCCGGTCGCCTGCGCCTGCGCGCCGGATCGCGA CGTGGCGCTGGCCATGCTTTTTGGCGAACGGCAATTCCGGGCGCAGCGCGGTGCGGCGCAATATTGGGCCTGGCGCTGGC ACGCGCCCGTGGCGCTTTACAGGCGCGAGGCGGCGCTGACCGAGCCGCCGGCCGAGTTCGCGGCGGTGCGGCTGGTCCCG GCGGCCGAGGATCGCGCGCTGGCCAGGGCGGTGCTGTCGCGCCTGGGACTGGACCCGGCCTTGGTTGCGGCCGATGCGCA GGGCGCGATCTCGGTCAGCCACGGCCCCGTCCGCTTCCAACGCCGGCCCGACGGGCGCATCCTGCTGGAGTTCGAGCCCG GTGCGCCGGGGCGGGGCCTGCGCGAGATGCCGCCGCGCCGCACGCTTGTCAGCCGGGCCCAGAATGCGTTGCGCAGCCAT GGCTTCCTGCTGCCGGGGACCGAGTTGGTCTTCGACCGCGTCTCGCTGGCCATGTCCGCGACGGCCAGCCTGCGCCGGCT GGACGAGCCTCCTGCGGAAAGCCTGGACGAAATCATCGTGCAATTCCGCCAGTCCATCGACGGTATCCCGGTGCTGACCC CGGATGCCGGCAGCCTGCGGCTGGCGATGCGGCCGGACGGCAGCGTGCTGCGCATCGAATCGACCCTGCGCCGGGTGGCT GAGCGCATGCCGGCCCGCGCCCATCCCCATGGCATGCCCGACGATCCGCCGGCACCCCTGCGGCCCGAGGGCCCGCCCAC GCCCGAGCCGCAGACGATCGCCCGCATCCTGGCGCAGCATTCGGCGCGGCTGATGCGCGATCTGGCGGCGCGCGGGGCGG CGCCGCTCAGCCTGCGCATCCTGCCGGGCACGACGGAAATCGGATACGGAATCCGCAGCAACACGGCGCGTCTCGTCGCC CGCCAGGGCATCGAGATCGAATGCGTGCGCGGCTTTCGCAAGCGTTACTGGATCCAGTCTGACCTGGGTGACTGA
Upstream 100 bases:
>100_bases CGGCTATTCAGGGGAGATTGCCGGGATTCGCGGGTGATTTGTATATTAACCGCAGATTCACGTTCAGTTCACGCGGCCCA TCCTAGCTTCGGTGCAGCAT
Downstream 100 bases:
>100_bases CGATCCGGTAGCCCGGGGGCGGAGGCAGCCGCCTCCGGGCACTTGACTGGCGGCAAGGCCATGGGGAGGAATTCCCGAGA GGGGGAGCATGGCGAAATAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 584; Mature: 583
Protein sequence:
>584_residues MTASACLAPEGPARVLQGADGMEDFVPRLDPGLDAARQVRAGQALETEAPLDPAEAVIGDTADGTGRGRRIYGACSVETY RAAGALHAAHRDAGGFLDAVDRFATPDFWRRDGAVKSWIYDRQAVEHAPGRDMDSVRVFYHAGHGRMDEDGIFHLPMGAL WTGADACLTSDRMRLGSGALRYLFWSTSQSLRIGPGYSPLHSWVRANQGLRMLFGFDSICWDSGRYGANFWHHWQMGKPF AQAWLDGAWDIAPDQSPVACACAPDRDVALAMLFGERQFRAQRGAAQYWAWRWHAPVALYRREAALTEPPAEFAAVRLVP AAEDRALARAVLSRLGLDPALVAADAQGAISVSHGPVRFQRRPDGRILLEFEPGAPGRGLREMPPRRTLVSRAQNALRSH GFLLPGTELVFDRVSLAMSATASLRRLDEPPAESLDEIIVQFRQSIDGIPVLTPDAGSLRLAMRPDGSVLRIESTLRRVA ERMPARAHPHGMPDDPPAPLRPEGPPTPEPQTIARILAQHSARLMRDLAARGAAPLSLRILPGTTEIGYGIRSNTARLVA RQGIEIECVRGFRKRYWIQSDLGD
Sequences:
>Translated_584_residues MTASACLAPEGPARVLQGADGMEDFVPRLDPGLDAARQVRAGQALETEAPLDPAEAVIGDTADGTGRGRRIYGACSVETY RAAGALHAAHRDAGGFLDAVDRFATPDFWRRDGAVKSWIYDRQAVEHAPGRDMDSVRVFYHAGHGRMDEDGIFHLPMGAL WTGADACLTSDRMRLGSGALRYLFWSTSQSLRIGPGYSPLHSWVRANQGLRMLFGFDSICWDSGRYGANFWHHWQMGKPF AQAWLDGAWDIAPDQSPVACACAPDRDVALAMLFGERQFRAQRGAAQYWAWRWHAPVALYRREAALTEPPAEFAAVRLVP AAEDRALARAVLSRLGLDPALVAADAQGAISVSHGPVRFQRRPDGRILLEFEPGAPGRGLREMPPRRTLVSRAQNALRSH GFLLPGTELVFDRVSLAMSATASLRRLDEPPAESLDEIIVQFRQSIDGIPVLTPDAGSLRLAMRPDGSVLRIESTLRRVA ERMPARAHPHGMPDDPPAPLRPEGPPTPEPQTIARILAQHSARLMRDLAARGAAPLSLRILPGTTEIGYGIRSNTARLVA RQGIEIECVRGFRKRYWIQSDLGD >Mature_583_residues TASACLAPEGPARVLQGADGMEDFVPRLDPGLDAARQVRAGQALETEAPLDPAEAVIGDTADGTGRGRRIYGACSVETYR AAGALHAAHRDAGGFLDAVDRFATPDFWRRDGAVKSWIYDRQAVEHAPGRDMDSVRVFYHAGHGRMDEDGIFHLPMGALW TGADACLTSDRMRLGSGALRYLFWSTSQSLRIGPGYSPLHSWVRANQGLRMLFGFDSICWDSGRYGANFWHHWQMGKPFA QAWLDGAWDIAPDQSPVACACAPDRDVALAMLFGERQFRAQRGAAQYWAWRWHAPVALYRREAALTEPPAEFAAVRLVPA AEDRALARAVLSRLGLDPALVAADAQGAISVSHGPVRFQRRPDGRILLEFEPGAPGRGLREMPPRRTLVSRAQNALRSHG FLLPGTELVFDRVSLAMSATASLRRLDEPPAESLDEIIVQFRQSIDGIPVLTPDAGSLRLAMRPDGSVLRIESTLRRVAE RMPARAHPHGMPDDPPAPLRPEGPPTPEPQTIARILAQHSARLMRDLAARGAAPLSLRILPGTTEIGYGIRSNTARLVAR QGIEIECVRGFRKRYWIQSDLGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63986; Mature: 63855
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASACLAPEGPARVLQGADGMEDFVPRLDPGLDAARQVRAGQALETEAPLDPAEAVIGD CCCCCCCCCCCHHHHHCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCC TADGTGRGRRIYGACSVETYRAAGALHAAHRDAGGFLDAVDRFATPDFWRRDGAVKSWIY CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCCHHHHHH DRQAVEHAPGRDMDSVRVFYHAGHGRMDEDGIFHLPMGALWTGADACLTSDRMRLGSGAL HHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCHHHCCCHHHHHHHHHHHCCCCE RYLFWSTSQSLRIGPGYSPLHSWVRANQGLRMLFGFDSICWDSGRYGANFWHHWQMGKPF EEEEECCCCCEEECCCCHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCCEEECCCCCHH AQAWLDGAWDIAPDQSPVACACAPDRDVALAMLFGERQFRAQRGAAQYWAWRWHAPVALY HHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHCCCHHHEEEEECCCHHHH RREAALTEPPAEFAAVRLVPAAEDRALARAVLSRLGLDPALVAADAQGAISVSHGPVRFQ HHHHHCCCCCHHHEEEEEECCCHHHHHHHHHHHHHCCCHHEEEECCCCCEEECCCCEEEE RRPDGRILLEFEPGAPGRGLREMPPRRTLVSRAQNALRSHGFLLPGTELVFDRVSLAMSA ECCCCEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH TASLRRLDEPPAESLDEIIVQFRQSIDGIPVLTPDAGSLRLAMRPDGSVLRIESTLRRVA HHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEECCCCCEEEHHHHHHHHH ERMPARAHPHGMPDDPPAPLRPEGPPTPEPQTIARILAQHSARLMRDLAARGAAPLSLRI HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE LPGTTEIGYGIRSNTARLVARQGIEIECVRGFRKRYWIQSDLGD ECCCCHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TASACLAPEGPARVLQGADGMEDFVPRLDPGLDAARQVRAGQALETEAPLDPAEAVIGD CCCCCCCCCCHHHHHCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCC TADGTGRGRRIYGACSVETYRAAGALHAAHRDAGGFLDAVDRFATPDFWRRDGAVKSWIY CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCCHHHHHH DRQAVEHAPGRDMDSVRVFYHAGHGRMDEDGIFHLPMGALWTGADACLTSDRMRLGSGAL HHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCHHHCCCHHHHHHHHHHHCCCCE RYLFWSTSQSLRIGPGYSPLHSWVRANQGLRMLFGFDSICWDSGRYGANFWHHWQMGKPF EEEEECCCCCEEECCCCHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCCEEECCCCCHH AQAWLDGAWDIAPDQSPVACACAPDRDVALAMLFGERQFRAQRGAAQYWAWRWHAPVALY HHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHCCCHHHEEEEECCCHHHH RREAALTEPPAEFAAVRLVPAAEDRALARAVLSRLGLDPALVAADAQGAISVSHGPVRFQ HHHHHCCCCCHHHEEEEEECCCHHHHHHHHHHHHHCCCHHEEEECCCCCEEECCCCEEEE RRPDGRILLEFEPGAPGRGLREMPPRRTLVSRAQNALRSHGFLLPGTELVFDRVSLAMSA ECCCCEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH TASLRRLDEPPAESLDEIIVQFRQSIDGIPVLTPDAGSLRLAMRPDGSVLRIESTLRRVA HHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEECCCCCEEEHHHHHHHHH ERMPARAHPHGMPDDPPAPLRPEGPPTPEPQTIARILAQHSARLMRDLAARGAAPLSLRI HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE LPGTTEIGYGIRSNTARLVARQGIEIECVRGFRKRYWIQSDLGD ECCCCHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA