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The map label for this gene is hypD [H]

Identifier: 119385833

GI number: 119385833

Start: 294654

End: 295790

Strand: Direct

Name: hypD [H]

Synonym: Pden_3111

Alternate gene names: 119385833

Gene position: 294654-295790 (Clockwise)

Preceding gene: 119385832

Following gene: 119385834

Centisome position: 17.03

GC content: 63.68

Gene sequence:

>1137_bases
ATGAAATTCGCTTCGGAATTCCGCGATCCCAAGGCGGCGCGCGCGCTGCTGGCCGCGATTGCCCGCCGCGCCGAGCAGAT
CGGCGCCAGCCGCGAAAAGCCGGTGCATATCATGGAGATCTGCGGCGGCCACACCCATTCGATCTTTCGCTATGGTCTGG
ACAAACTGGTGCATGAGGGCGTGGAATTCATCCACGGCCCCGGCTGTCCGGTTTGCGTTCTGCCGCGTGCGCGGATCGAT
GAATCCATCCAGATTGCCAGGCGTCCGGGCGTCATCTTCACCACCTTTGGCGATGCGATGAGGGTGCCGGGCCGGTCGCA
ATCGCTGTTGCAGGCGCGGGCGGCGGGGGCGGATATCCGCATGGTCTATTCGCCGCTGGATGCCCTGGCTCTGGCCCGGA
AATACCCCGAACGCGACGTGGTGTTCTTTGGTCTGGGCTTCGAGACGACGACCCCTTCGACCGCGCTGGCCATCCAGCAG
GCCGCGCGGGAAGGGTTGGGCAATTTCAGCGTCTTCTGCAACCATATCACCGTGCCCGAACCCATCCACGCCCTGCTGAA
GGATCCGCATATGGTGCTGGACGGGTTCATCGGGCCGGGTCATGTCTCGATGGTCATCGGCGTGCATCCCTATGATTTCA
TTGCCCGGGACTTCCAGAAACCGCTTGTCGTCGCAGGTTTCGAGCCGACCGATCTTCTGCAATCGGTGCTGATTGTGCTG
GACCAGATCGCCGAGGGGCGCGCCGAGGTCGAAAACCAATATGCCCGCGTGGTCCCCGAGGAGGGCAATCCGGTTAGTCT
GGCCGCCATTGCCGATGTCTATGAACGGCGCCCCAGCTTTGAATGGCGCGGTCTGGGCGAGATCGACGCCAGCGGATTGC
GCATCCGCCCGAAATACGCAGCCTTCGACGCCGAGGAAAAATTCGGCATCGGCTATGCGGTGGCGCGCAATCCCGCACCC
GAACCCGAGGGCTGTGCCTGTGGCGCCGTCATGACGGGGCGGGTCAAACCTACGGCCTGCCCGCATTTCGGCAAGGGCTG
CACGCCAGAGATGCCGCTGGGGGCGCTGATGGTCAGTTCGGAAGGGGCCTGTGCGGCCTATTGGCAATATGGCGGTGCGC
GGGTTGCAGCGGAATAG

Upstream 100 bases:

>100_bases
ACGAGGACGAGGCGGCGCGCACGCTGGCCGCGCTGCATGAACTGGGCGAGGCGCAAGAGGCGCTTGAACAGATGGCCGAA
GCCGACCGGGAGATGGCACG

Downstream 100 bases:

>100_bases
GGCGGGCAGAACATGAACGCAATGGCTTTTGGAACCCTGCGCGACAGCCATGTGACCCTGTCGCATGGCGGTGGCGGCAA
GGCGATGGCCGATCTGATCG

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MKFASEFRDPKAARALLAAIARRAEQIGASREKPVHIMEICGGHTHSIFRYGLDKLVHEGVEFIHGPGCPVCVLPRARID
ESIQIARRPGVIFTTFGDAMRVPGRSQSLLQARAAGADIRMVYSPLDALALARKYPERDVVFFGLGFETTTPSTALAIQQ
AAREGLGNFSVFCNHITVPEPIHALLKDPHMVLDGFIGPGHVSMVIGVHPYDFIARDFQKPLVVAGFEPTDLLQSVLIVL
DQIAEGRAEVENQYARVVPEEGNPVSLAAIADVYERRPSFEWRGLGEIDASGLRIRPKYAAFDAEEKFGIGYAVARNPAP
EPEGCACGAVMTGRVKPTACPHFGKGCTPEMPLGALMVSSEGACAAYWQYGGARVAAE

Sequences:

>Translated_378_residues
MKFASEFRDPKAARALLAAIARRAEQIGASREKPVHIMEICGGHTHSIFRYGLDKLVHEGVEFIHGPGCPVCVLPRARID
ESIQIARRPGVIFTTFGDAMRVPGRSQSLLQARAAGADIRMVYSPLDALALARKYPERDVVFFGLGFETTTPSTALAIQQ
AAREGLGNFSVFCNHITVPEPIHALLKDPHMVLDGFIGPGHVSMVIGVHPYDFIARDFQKPLVVAGFEPTDLLQSVLIVL
DQIAEGRAEVENQYARVVPEEGNPVSLAAIADVYERRPSFEWRGLGEIDASGLRIRPKYAAFDAEEKFGIGYAVARNPAP
EPEGCACGAVMTGRVKPTACPHFGKGCTPEMPLGALMVSSEGACAAYWQYGGARVAAE
>Mature_378_residues
MKFASEFRDPKAARALLAAIARRAEQIGASREKPVHIMEICGGHTHSIFRYGLDKLVHEGVEFIHGPGCPVCVLPRARID
ESIQIARRPGVIFTTFGDAMRVPGRSQSLLQARAAGADIRMVYSPLDALALARKYPERDVVFFGLGFETTTPSTALAIQQ
AAREGLGNFSVFCNHITVPEPIHALLKDPHMVLDGFIGPGHVSMVIGVHPYDFIARDFQKPLVVAGFEPTDLLQSVLIVL
DQIAEGRAEVENQYARVVPEEGNPVSLAAIADVYERRPSFEWRGLGEIDASGLRIRPKYAAFDAEEKFGIGYAVARNPAP
EPEGCACGAVMTGRVKPTACPHFGKGCTPEMPLGALMVSSEGACAAYWQYGGARVAAE

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=375, Percent_Identity=54.4, Blast_Score=419, Evalue=1e-118,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40908; Mature: 40908

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFASEFRDPKAARALLAAIARRAEQIGASREKPVHIMEICGGHTHSIFRYGLDKLVHEG
CCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
VEFIHGPGCPVCVLPRARIDESIQIARRPGVIFTTFGDAMRVPGRSQSLLQARAAGADIR
HHHHCCCCCCEEECCHHHCCCHHHHHCCCCEEEEECCCHHCCCCCCHHHHHHHHCCCCEE
MVYSPLDALALARKYPERDVVFFGLGFETTTPSTALAIQQAAREGLGNFSVFCNHITVPE
EEHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCH
PIHALLKDPHMVLDGFIGPGHVSMVIGVHPYDFIARDFQKPLVVAGFEPTDLLQSVLIVL
HHHHHHCCCHHEECCCCCCCCEEEEEECCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
DQIAEGRAEVENQYARVVPEEGNPVSLAAIADVYERRPSFEWRGLGEIDASGLRIRPKYA
HHHHCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCHH
AFDAEEKFGIGYAVARNPAPEPEGCACGAVMTGRVKPTACPHFGKGCTPEMPLGALMVSS
CCCCCHHCCCEEEEECCCCCCCCCCEECCEEECCCCCCCCCCCCCCCCCCCCCCEEEECC
EGACAAYWQYGGARVAAE
CCCEEEEEECCCEEECCC
>Mature Secondary Structure
MKFASEFRDPKAARALLAAIARRAEQIGASREKPVHIMEICGGHTHSIFRYGLDKLVHEG
CCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
VEFIHGPGCPVCVLPRARIDESIQIARRPGVIFTTFGDAMRVPGRSQSLLQARAAGADIR
HHHHCCCCCCEEECCHHHCCCHHHHHCCCCEEEEECCCHHCCCCCCHHHHHHHHCCCCEE
MVYSPLDALALARKYPERDVVFFGLGFETTTPSTALAIQQAAREGLGNFSVFCNHITVPE
EEHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCH
PIHALLKDPHMVLDGFIGPGHVSMVIGVHPYDFIARDFQKPLVVAGFEPTDLLQSVLIVL
HHHHHHCCCHHEECCCCCCCCEEEEEECCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
DQIAEGRAEVENQYARVVPEEGNPVSLAAIADVYERRPSFEWRGLGEIDASGLRIRPKYA
HHHHCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCHH
AFDAEEKFGIGYAVARNPAPEPEGCACGAVMTGRVKPTACPHFGKGCTPEMPLGALMVSS
CCCCCHHCCCEEEEECCCCCCCCCCEECCEEECCCCCCCCCCCCCCCCCCCCCCEEEECC
EGACAAYWQYGGARVAAE
CCCEEEEEECCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]