Click here to switch to the map view.

The map label for this gene is hypC [H]

Identifier: 119385832

GI number: 119385832

Start: 294373

End: 294657

Strand: Direct

Name: hypC [H]

Synonym: Pden_3110

Alternate gene names: 119385832

Gene position: 294373-294657 (Clockwise)

Preceding gene: 119385831

Following gene: 119385833

Centisome position: 17.01

GC content: 67.37

Gene sequence:

>285_bases
ATGTGTCTGGGAATTCCCGGTCGCATCATCGCCATGACCGATCCCGCGCGGATGATGGCCATGGCCGAGGTCTCGGGCGT
GCGCCGCGAGGTCAATATCGCCTGCGTGGCCGAGGGGCCGCCCGAGGGGCTGATCGGCCGCTGGGTGCTGATCCATGTCG
GTTTCGCCATGAGCCTGATCGACGAGGACGAGGCGGCGCGCACGCTGGCCGCGCTGCATGAACTGGGCGAGGCGCAAGAG
GCGCTTGAACAGATGGCCGAAGCCGACCGGGAGATGGCACGATGA

Upstream 100 bases:

>100_bases
AGCTGGGTGTGTCGCGGGTGGGCCTGCGCGCCAAGCTGGACCGCTATGGCGTCAAGGACCCGGCCGAGCGTCAGGCCACC
CCGGAAGAGGAGGAATAGCC

Downstream 100 bases:

>100_bases
AATTCGCTTCGGAATTCCGCGATCCCAAGGCGGCGCGCGCGCTGCTGGCCGCGATTGCCCGCCGCGCCGAGCAGATCGGC
GCCAGCCGCGAAAAGCCGGT

Product: hydrogenase assembly chaperone hypC/hupF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MCLGIPGRIIAMTDPARMMAMAEVSGVRREVNIACVAEGPPEGLIGRWVLIHVGFAMSLIDEDEAARTLAALHELGEAQE
ALEQMAEADREMAR

Sequences:

>Translated_94_residues
MCLGIPGRIIAMTDPARMMAMAEVSGVRREVNIACVAEGPPEGLIGRWVLIHVGFAMSLIDEDEAARTLAALHELGEAQE
ALEQMAEADREMAR
>Mature_94_residues
MCLGIPGRIIAMTDPARMMAMAEVSGVRREVNIACVAEGPPEGLIGRWVLIHVGFAMSLIDEDEAARTLAALHELGEAQE
ALEQMAEADREMAR

Specific function: May Have A Specific Role In The Maturation Of The Large Subunits Of Hyd1 And Hyd2. [C]

COG id: COG0298

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupF/hypC family [H]

Homologues:

Organism=Escherichia coli, GI1789364, Length=75, Percent_Identity=53.3333333333333, Blast_Score=94, Evalue=2e-21,
Organism=Escherichia coli, GI1789083, Length=79, Percent_Identity=41.7721518987342, Blast_Score=62, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019812
- InterPro:   IPR001109 [H]

Pfam domain/function: PF01455 HupF_HypC [H]

EC number: NA

Molecular weight: Translated: 10162; Mature: 10162

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS01097 HUPF_HYPC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
8.5 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
8.5 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLGIPGRIIAMTDPARMMAMAEVSGVRREVNIACVAEGPPEGLIGRWVLIHVGFAMSLI
CCCCCCCEEEEEECHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
DEDEAARTLAALHELGEAQEALEQMAEADREMAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MCLGIPGRIIAMTDPARMMAMAEVSGVRREVNIACVAEGPPEGLIGRWVLIHVGFAMSLI
CCCCCCCEEEEEECHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
DEDEAARTLAALHELGEAQEALEQMAEADREMAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]