| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is penA [H]
Identifier: 119358491
GI number: 119358491
Start: 3118797
End: 3120851
Strand: Reverse
Name: penA [H]
Synonym: Cpha266_2727
Alternate gene names: 119358491
Gene position: 3120851-3118797 (Counterclockwise)
Preceding gene: 119358492
Following gene: 119358490
Centisome position: 99.58
GC content: 50.61
Gene sequence:
>2055_bases ATGAACTTTCAACGGATTGAAAAGGATTCGGCCATGAATGACAATCTGTCGCATACGGAGACCGGCGATAAGCGATTCGG ACAACGTCTCGGATTTGTTGTTCTGCTGTTTTTCGTGTTTCTTGTTGCCATTATTCTGATGCTGCTCAATATTCAGGTTG TCAATGTCAGAAAGTATCAGGAAAAAGCATTAAAGCAGTATGTCAGGATTGTGACCGAAAAAGCGCAGAGGGGTATCATC ATCGACCGTCACGGACGCATGCTTGCCGAAACGGTTGAGACGATCTCGTTTTATGCCGACCCGAAGAAGGTCAGGAAAAC GCCGGTCGTCGATAAAAACGGCAAAATGGTAGTCGACAGGAAAAGCAGGGAACTGAAAACCCATGACAACACGGCGGAAA TCGCAAAGATGTTTTCAGAGGTAACCGGCCAACCGCAAAGGTTTTATCTCAAGGCGCTCAGGAAGCGCAAAGGGGTAGCC GTTCTTGCCCGGAAGTTGCCGGTCGCGAAGGCTTTGCCGCTTATGCAGCAAAAGATTCACGGTGTCTGGTTCGACAAAGA GCAGCAGCGATATTATCTCAATGTCGCCGCTCAGGTAATCGGGGTTACCGACAGTAAAAACAAGGGGATCAGCGGTCTTG AGCTGCAACTTGACAAATCGCTTCGCGGGCAGGACGGTTCAAGGATTTATCAGCGTTCAGCAAACGGCACTCGATACCCC GCACCCGATGTTCTTCAGCAGGACCCTGAAAAAGGAAACTCGGTTCAGTTGACCATCGATGCAGATATACAGAGCATCGT TGAAGATGAGCTTGCCAAAGCAGTGGTTGAATTTCAGGCAGGTGCGGCATCGGGAATCGTTATGGATGTCAGAAGCGGCG AGATTCTCGCAATGGCAAGCAATCCGACATATGATCTGAACCGAAGAGCGACCTGGACTCCGGAGAGGTCGCGAAACCGG GCGGTAACCGACAGTTATGAACCGGGTTCAACCTTCAAGATCGTCATGGCATCAGCAGGAACAGAGGTCTTGCACCGAAA AGCGGAAGACATGGTGTTTGCTCATAACGGGGTGCTTCCGTTCGGTCGGCTCAGAATCCGGGACCATGAGGCATACGGGA ACATTACGTTTCAGCAGGCCGTCATGTATTCAAGCAACGTTATCGCAGCAAAGACGGCGATGGCCGTTGGCCCGGAAAAG TTTTACGCCTATACGAAAAACTTCGGGTTTGGATCAAAAAGCGGGGTAGGTCTGATCGGGGAGTCTCCGGGATTTGTACG TTCCCTGAAAAAATGGGATAAAACGACCCTGCCCTGGATGGGTTATGGTTATCAGGTTATGGTAACGCCGTTGCAGATGG TGCAGGCCTATGCTGCTCTGGCCAATGACGGCGAGCTGATGCGTCCATTTGTAGTAAAAAAGGTTATGGATAGAGAGGGG AAGGTGATTCGCGAAAACACCCCTCAAACAGTCAGAAAAGTTGTGACAACGGAAACGGCAAGATATCTCGCCCAGAGGTA CTTCAAGGCTGTCGTTGACAGCGGAACCGCAAAAAAAGCCGCAATTCCGGGCATCAGTGTTGCGGGAAAAACAGGTACGG CTCGCCGGGCCAGAAACGGATCCTATGCCAATCCCGTTTTTATCGCCTCATTTGTCGGATTTTTTCCGGTCGAATCTCCG AGATATGCCATGATTATTCTTGTTGAGGAGCCTCGGGGAATGTATTATGGCGGGACCGTCGCGGCGCCTGTTTTTTCGTC GATAGCAACAAGGATGCTCGCCTGTTCAGAAGAACTACAGAAAAATCTTGCCTTTAGGGCTCCTGAACAGGGGGTGATTG ACGCCATCGCAACAGTAGCGGTTCCCGACCTGCATGGGCTCAAGGGCAAGGATGCAAAACGTCTGCTCGAATGGCTCGGT CTTGTCATGGAATACACGGGCGATAGTGACGGTCTTGTTGTTTATCAGAACGTGACGGCAGGAGTTCCTGTCGACAAGGA AAGCATAATCAGAGTAAAGCTTGCCATGAAAACGGTGAAGAGGACATCCCTGTGA
Upstream 100 bases:
>100_bases TCAAGGCGAGTGAATTGCAGAGTATTCACAATATCACGGAATGCACGGGAGCTCTTGGTCTGCAGGCCTCTTCAGTTCCT GCCGTTGAGCTTGCTGTTCC
Downstream 100 bases:
>100_bases AAAGCCTGCGCACTGATGATGGAAATCGGGCGATGTCGCTCGCGGATCTCATCCGGCAGATCCCCGTACTCGAAGCGGCA GGCGGCAGCACGACGTCCCT
Product: peptidoglycan glycosyltransferase
Products: NA
Alternate protein names: PBP-2 [H]
Number of amino acids: Translated: 684; Mature: 684
Protein sequence:
>684_residues MNFQRIEKDSAMNDNLSHTETGDKRFGQRLGFVVLLFFVFLVAIILMLLNIQVVNVRKYQEKALKQYVRIVTEKAQRGII IDRHGRMLAETVETISFYADPKKVRKTPVVDKNGKMVVDRKSRELKTHDNTAEIAKMFSEVTGQPQRFYLKALRKRKGVA VLARKLPVAKALPLMQQKIHGVWFDKEQQRYYLNVAAQVIGVTDSKNKGISGLELQLDKSLRGQDGSRIYQRSANGTRYP APDVLQQDPEKGNSVQLTIDADIQSIVEDELAKAVVEFQAGAASGIVMDVRSGEILAMASNPTYDLNRRATWTPERSRNR AVTDSYEPGSTFKIVMASAGTEVLHRKAEDMVFAHNGVLPFGRLRIRDHEAYGNITFQQAVMYSSNVIAAKTAMAVGPEK FYAYTKNFGFGSKSGVGLIGESPGFVRSLKKWDKTTLPWMGYGYQVMVTPLQMVQAYAALANDGELMRPFVVKKVMDREG KVIRENTPQTVRKVVTTETARYLAQRYFKAVVDSGTAKKAAIPGISVAGKTGTARRARNGSYANPVFIASFVGFFPVESP RYAMIILVEEPRGMYYGGTVAAPVFSSIATRMLACSEELQKNLAFRAPEQGVIDAIATVAVPDLHGLKGKDAKRLLEWLG LVMEYTGDSDGLVVYQNVTAGVPVDKESIIRVKLAMKTVKRTSL
Sequences:
>Translated_684_residues MNFQRIEKDSAMNDNLSHTETGDKRFGQRLGFVVLLFFVFLVAIILMLLNIQVVNVRKYQEKALKQYVRIVTEKAQRGII IDRHGRMLAETVETISFYADPKKVRKTPVVDKNGKMVVDRKSRELKTHDNTAEIAKMFSEVTGQPQRFYLKALRKRKGVA VLARKLPVAKALPLMQQKIHGVWFDKEQQRYYLNVAAQVIGVTDSKNKGISGLELQLDKSLRGQDGSRIYQRSANGTRYP APDVLQQDPEKGNSVQLTIDADIQSIVEDELAKAVVEFQAGAASGIVMDVRSGEILAMASNPTYDLNRRATWTPERSRNR AVTDSYEPGSTFKIVMASAGTEVLHRKAEDMVFAHNGVLPFGRLRIRDHEAYGNITFQQAVMYSSNVIAAKTAMAVGPEK FYAYTKNFGFGSKSGVGLIGESPGFVRSLKKWDKTTLPWMGYGYQVMVTPLQMVQAYAALANDGELMRPFVVKKVMDREG KVIRENTPQTVRKVVTTETARYLAQRYFKAVVDSGTAKKAAIPGISVAGKTGTARRARNGSYANPVFIASFVGFFPVESP RYAMIILVEEPRGMYYGGTVAAPVFSSIATRMLACSEELQKNLAFRAPEQGVIDAIATVAVPDLHGLKGKDAKRLLEWLG LVMEYTGDSDGLVVYQNVTAGVPVDKESIIRVKLAMKTVKRTSL >Mature_684_residues MNFQRIEKDSAMNDNLSHTETGDKRFGQRLGFVVLLFFVFLVAIILMLLNIQVVNVRKYQEKALKQYVRIVTEKAQRGII IDRHGRMLAETVETISFYADPKKVRKTPVVDKNGKMVVDRKSRELKTHDNTAEIAKMFSEVTGQPQRFYLKALRKRKGVA VLARKLPVAKALPLMQQKIHGVWFDKEQQRYYLNVAAQVIGVTDSKNKGISGLELQLDKSLRGQDGSRIYQRSANGTRYP APDVLQQDPEKGNSVQLTIDADIQSIVEDELAKAVVEFQAGAASGIVMDVRSGEILAMASNPTYDLNRRATWTPERSRNR AVTDSYEPGSTFKIVMASAGTEVLHRKAEDMVFAHNGVLPFGRLRIRDHEAYGNITFQQAVMYSSNVIAAKTAMAVGPEK FYAYTKNFGFGSKSGVGLIGESPGFVRSLKKWDKTTLPWMGYGYQVMVTPLQMVQAYAALANDGELMRPFVVKKVMDREG KVIRENTPQTVRKVVTTETARYLAQRYFKAVVDSGTAKKAAIPGISVAGKTGTARRARNGSYANPVFIASFVGFFPVESP RYAMIILVEEPRGMYYGGTVAAPVFSSIATRMLACSEELQKNLAFRAPEQGVIDAIATVAVPDLHGLKGKDAKRLLEWLG LVMEYTGDSDGLVVYQNVTAGVPVDKESIIRVKLAMKTVKRTSL
Specific function: Synthesis of cross-linked peptidoglycan from the lipid intermediates [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=577, Percent_Identity=31.369150779896, Blast_Score=235, Evalue=6e-63, Organism=Escherichia coli, GI1786854, Length=603, Percent_Identity=24.7097844112769, Blast_Score=99, Evalue=6e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 75999; Mature: 75999
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFQRIEKDSAMNDNLSHTETGDKRFGQRLGFVVLLFFVFLVAIILMLLNIQVVNVRKYQ CCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHH EKALKQYVRIVTEKAQRGIIIDRHGRMLAETVETISFYADPKKVRKTPVVDKNGKMVVDR HHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEC KSRELKTHDNTAEIAKMFSEVTGQPQRFYLKALRKRKGVAVLARKLPVAKALPLMQQKIH CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHC GVWFDKEQQRYYLNVAAQVIGVTDSKNKGISGLELQLDKSLRGQDGSRIYQRSANGTRYP CCCCCCCCHHHHEEEEEHHEECCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCC APDVLQQDPEKGNSVQLTIDADIQSIVEDELAKAVVEFQAGAASGIVMDVRSGEILAMAS CCHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEC NPTYDLNRRATWTPERSRNRAVTDSYEPGSTFKIVMASAGTEVLHRKAEDMVFAHNGVLP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHEEEEECCCCC FGRLRIRDHEAYGNITFQQAVMYSSNVIAAKTAMAVGPEKFYAYTKNFGFGSKSGVGLIG CCEEEEEECCCCCCEEHHHHHHHCCCEEEHHHHHHCCCHHHHEEECCCCCCCCCCCEEEC ESPGFVRSLKKWDKTTLPWMGYGYQVMVTPLQMVQAYAALANDGELMRPFVVKKVMDREG CCCHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC KVIRENTPQTVRKVVTTETARYLAQRYFKAVVDSGTAKKAAIPGISVAGKTGTARRARNG CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEECCCCCCCHHCCCC SYANPVFIASFVGFFPVESPRYAMIILVEEPRGMYYGGTVAAPVFSSIATRMLACSEELQ CCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHH KNLAFRAPEQGVIDAIATVAVPDLHGLKGKDAKRLLEWLGLVMEYTGDSDGLVVYQNVTA HHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC GVPVDKESIIRVKLAMKTVKRTSL CCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNFQRIEKDSAMNDNLSHTETGDKRFGQRLGFVVLLFFVFLVAIILMLLNIQVVNVRKYQ CCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHH EKALKQYVRIVTEKAQRGIIIDRHGRMLAETVETISFYADPKKVRKTPVVDKNGKMVVDR HHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEC KSRELKTHDNTAEIAKMFSEVTGQPQRFYLKALRKRKGVAVLARKLPVAKALPLMQQKIH CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHC GVWFDKEQQRYYLNVAAQVIGVTDSKNKGISGLELQLDKSLRGQDGSRIYQRSANGTRYP CCCCCCCCHHHHEEEEEHHEECCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCC APDVLQQDPEKGNSVQLTIDADIQSIVEDELAKAVVEFQAGAASGIVMDVRSGEILAMAS CCHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEC NPTYDLNRRATWTPERSRNRAVTDSYEPGSTFKIVMASAGTEVLHRKAEDMVFAHNGVLP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHEEEEECCCCC FGRLRIRDHEAYGNITFQQAVMYSSNVIAAKTAMAVGPEKFYAYTKNFGFGSKSGVGLIG CCEEEEEECCCCCCEEHHHHHHHCCCEEEHHHHHHCCCHHHHEEECCCCCCCCCCCEEEC ESPGFVRSLKKWDKTTLPWMGYGYQVMVTPLQMVQAYAALANDGELMRPFVVKKVMDREG CCCHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC KVIRENTPQTVRKVVTTETARYLAQRYFKAVVDSGTAKKAAIPGISVAGKTGTARRARNG CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEECCCCCCCHHCCCC SYANPVFIASFVGFFPVESPRYAMIILVEEPRGMYYGGTVAAPVFSSIATRMLACSEELQ CCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHH KNLAFRAPEQGVIDAIATVAVPDLHGLKGKDAKRLLEWLGLVMEYTGDSDGLVVYQNVTA HHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC GVPVDKESIIRVKLAMKTVKRTSL CCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3126399 [H]