| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119358391
Identifier: 119358391
GI number: 119358391
Start: 3010092
End: 3011021
Strand: Reverse
Name: 119358391
Synonym: Cpha266_2624
Alternate gene names: NA
Gene position: 3011021-3010092 (Counterclockwise)
Preceding gene: 119358394
Following gene: 119358390
Centisome position: 96.08
GC content: 29.03
Gene sequence:
>930_bases ATGTCTAAAATATTACTATTTGGTTGTTATACTCAAGGTAATTTCGGAGATGATTTAATGGCAATTTTTTTTTCTAAATT ATTAGAGCAATGCGGGCATGATGTAACAGCATATAAACTACCATATCATTTATCAACTAAGTATAAAATAAAGTCGTGCT CAAATATTCTGAAAGCAGTTAATGAAGTTGAGGTTATTGTTTTGGGTGGGGGTGCATTAATAAAAAATGGAATAACCAGT CATGGCAGCGTTAAAAAGTTATTAGAAGAACTATTATACGCTATTAATTTAAAAACCCTGCCTATATATTGTGTATCAAT TGGTTCCTCTGGATTAGATGATTTAAGTCAATTGGATTCTGTTAGAAGAGATATATTTATGTCAAATAATTTTAAGGGCG GATTAGTACGGTTGAAAAAAGATATTGATCTATTTGATGGTAAAGTTGAATATGTTCCAGATATAGTCCTTTGCACAAGA TTAATACTTGAAAGATATTTTAAATATATTCAAAATAAAGCAGGCAAGGGAAGTATAATAAATGCCACATGGAGTAATCT GTCAGATGTTTTAAGTTTATTTCGTGATTTGAATATATTCAATGTGGTTTTTTTGAAAACACATGATCCGAGAAATAAAG TGTATTCTGAGATATTTATTCCGGGCTTAAAGAAATATATTAACAGAGATCCGATTGATACTTCTATATTCGTTTCATCA TTTAAAGATATTTATTCTTCAAAATTGCATCTTGGTGTTGCGGGGATTTCGTTTGGATTAACATTTCATACTATTAATCC AGCTAATAAAACTATTGACTTTTTAAAAGATAAGGGAGAGTATGAATGCGAATGTGAGAGTAATGTATCAGAGCTTAAAT CTCAAGATAAGATATTAAGTAGTTATATTGATTTTCTAAAAGCATTATAA
Upstream 100 bases:
>100_bases GCTAACCTATTAATATTAATAAGTATATCATTCATGAATAAATCAAAGATCGCTAAAGTATATGAAATGAGTTAATATAA ATATTTAAATTAATAGCTAT
Downstream 100 bases:
>100_bases TGTATATATTGTTCACAAATATTATAATTACTTCTATTGTTTTGCTTATGCGTAAGCAAAATATATCAGGTGTTATGTCT TTTTTTAGTCTTTTTGTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MSKILLFGCYTQGNFGDDLMAIFFSKLLEQCGHDVTAYKLPYHLSTKYKIKSCSNILKAVNEVEVIVLGGGALIKNGITS HGSVKKLLEELLYAINLKTLPIYCVSIGSSGLDDLSQLDSVRRDIFMSNNFKGGLVRLKKDIDLFDGKVEYVPDIVLCTR LILERYFKYIQNKAGKGSIINATWSNLSDVLSLFRDLNIFNVVFLKTHDPRNKVYSEIFIPGLKKYINRDPIDTSIFVSS FKDIYSSKLHLGVAGISFGLTFHTINPANKTIDFLKDKGEYECECESNVSELKSQDKILSSYIDFLKAL
Sequences:
>Translated_309_residues MSKILLFGCYTQGNFGDDLMAIFFSKLLEQCGHDVTAYKLPYHLSTKYKIKSCSNILKAVNEVEVIVLGGGALIKNGITS HGSVKKLLEELLYAINLKTLPIYCVSIGSSGLDDLSQLDSVRRDIFMSNNFKGGLVRLKKDIDLFDGKVEYVPDIVLCTR LILERYFKYIQNKAGKGSIINATWSNLSDVLSLFRDLNIFNVVFLKTHDPRNKVYSEIFIPGLKKYINRDPIDTSIFVSS FKDIYSSKLHLGVAGISFGLTFHTINPANKTIDFLKDKGEYECECESNVSELKSQDKILSSYIDFLKAL >Mature_308_residues SKILLFGCYTQGNFGDDLMAIFFSKLLEQCGHDVTAYKLPYHLSTKYKIKSCSNILKAVNEVEVIVLGGGALIKNGITSH GSVKKLLEELLYAINLKTLPIYCVSIGSSGLDDLSQLDSVRRDIFMSNNFKGGLVRLKKDIDLFDGKVEYVPDIVLCTRL ILERYFKYIQNKAGKGSIINATWSNLSDVLSLFRDLNIFNVVFLKTHDPRNKVYSEIFIPGLKKYINRDPIDTSIFVSSF KDIYSSKLHLGVAGISFGLTFHTINPANKTIDFLKDKGEYECECESNVSELKSQDKILSSYIDFLKAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34753; Mature: 34622
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: PS00962 RIBOSOMAL_S2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKILLFGCYTQGNFGDDLMAIFFSKLLEQCGHDVTAYKLPYHLSTKYKIKSCSNILKAV CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCEECCCCEEHHHHHHHHHHH NEVEVIVLGGGALIKNGITSHGSVKKLLEELLYAINLKTLPIYCVSIGSSGLDDLSQLDS CCEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHH VRRDIFMSNNFKGGLVRLKKDIDLFDGKVEYVPDIVLCTRLILERYFKYIQNKAGKGSII HHHHHHHCCCCCCCCEEEECCCHHCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEE NATWSNLSDVLSLFRDLNIFNVVFLKTHDPRNKVYSEIFIPGLKKYINRDPIDTSIFVSS ECHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH FKDIYSSKLHLGVAGISFGLTFHTINPANKTIDFLKDKGEYECECESNVSELKSQDKILS HHHHHHCHHHEEEEEHEECEEEEEECCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHH SYIDFLKAL HHHHHHHCC >Mature Secondary Structure SKILLFGCYTQGNFGDDLMAIFFSKLLEQCGHDVTAYKLPYHLSTKYKIKSCSNILKAV CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCEECCCCEEHHHHHHHHHHH NEVEVIVLGGGALIKNGITSHGSVKKLLEELLYAINLKTLPIYCVSIGSSGLDDLSQLDS CCEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHH VRRDIFMSNNFKGGLVRLKKDIDLFDGKVEYVPDIVLCTRLILERYFKYIQNKAGKGSII HHHHHHHCCCCCCCCEEEECCCHHCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEE NATWSNLSDVLSLFRDLNIFNVVFLKTHDPRNKVYSEIFIPGLKKYINRDPIDTSIFVSS ECHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH FKDIYSSKLHLGVAGISFGLTFHTINPANKTIDFLKDKGEYECECESNVSELKSQDKILS HHHHHHCHHHEEEEEHEECEEEEEECCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHH SYIDFLKAL HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA