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The map label for this gene is ykfC [H]

Identifier: 119358394

GI number: 119358394

Start: 3012714

End: 3014195

Strand: Reverse

Name: ykfC [H]

Synonym: Cpha266_2627

Alternate gene names: 119358394

Gene position: 3014195-3012714 (Counterclockwise)

Preceding gene: 119358395

Following gene: 119358391

Centisome position: 96.18

GC content: 53.58

Gene sequence:

>1482_bases
ATGATGTACGGTACGGAGAAGTCAGACCTGCCCATACTACCGGAGAAGCGAGCGAACAAAGCGGGTAAGCCCGTAGCGGA
GTTCGTGGAGGGAAGGGGTGGGAACAAGAGAAATGCGGAACTGCAAAGCATGGCCCGGACACAGGGTCGGGAAGCCGTGT
TCCAAGCGCAGGGTCGCATACGTGAAGCAGTAACCAGAAATCGAGGAGAAAAGCTGACAGCGCTTCTGCATCACATCTCC
GTAGACTGCCTGCGCTGGTCGTACTTCGAACTGAAGAAGACCGCAGCAACGGGAGTCGATGGGATAACGTGGAAAGATTA
CGGGGAAGGACTGGAAGAGAACCTTGCAGACCTGCACCGGCGAATCCACACGGGAGCGTACCGGGCACAGCCATCGCGCC
GGAAGTACATACCGAAGGCAAATGGCCAACAACGACCGCTCGGCATCGCCGCATTGGAAGACAAAATTGTACAGCGGGCA
GTGGTGGCGATTCTCACGCCAATCTACGAAGCGGAGTTTCTGGGGTTCAGCTATGGATTCCGTCCGGGACGCAGTCAGCA
TGATGCGCTGGATGCACTCGCATACGGGATCAAGGTGAAGAAAATCGGCTGGGTATTGGACGCCGATATTTCCCGGTTTT
TTGATACGATCAGCCATGAGTGGATGATACGCTTTTTGGAACACCGTATCGGTGACAAGCGGATTGTCCGACTGATTATC
AAGTGGCTGAAAGCTGGGGTACTGGAAGATAGCGTACGGATCGAGGCAGAAGAAGGAACACCGCAGGGAGCCGTGATATC
ACCGCTCCTTGCGAACATCTACCTTCACTATGCTTATGACCTGTGGGCTAAGCAGTGGCGGGAAAAGCACTGCAAAGGTG
ATATGATCGTCGTGCGTTTCGCTGACGATAGTGTCGCAGGCTTCCAGAACAAGGAAGATGGCGAAAGATTCCTAGCTGAT
CTGAAAGAGCGACTGGCAAAGTTCGCGCTAACGTTGCATCCAGAGAAAACCCGACTGATTGAGTTCGGCAGGTATGCTGC
CAAGAACCGACAAAGACGGGGACAAGGGCGGCCGGAAACCTTTGACTTTCTCGGATTTACCCACATCTGTGGAGAGAAAG
TAGTGGGGAAAGGCTTTCAGCTCTTGCGCAAGACGAAGCGCGGATCAGTGAGAACCAAGCTCGGAGAGGTAAAGAAAGAG
CTGAGACGGCGAATGCATGTCTCAGTATCGGAACAGGGAAAGTGGCTGAACAGCGTGTTGAGAGGTCACTATGCCTATTT
CGCAGTGCCCACAAACACGAGGGCGTTATCGGCATTCCGCTACCATGTTGCCAGACGTTGGATGAAGAGCCTCAGGCGCC
GAAGCCAGCGGCATGTGATGACATGGGAGCGAATGATGATATATATTGATCAGTACCTCCCAAACCCAAAGATCCTTCAC
CCATGGCCGGAACAACGGTTTTGCGTCAAACACTCAAGTTAG

Upstream 100 bases:

>100_bases
CTGGCATGTATGTAAGCCTCTTACACGGGAACCGGGAGATCTCCGATACCACCCATCGTCGTTGGCGGGTCGCATCGGGA
AAACGTAATAGTTGAAGCCG

Downstream 100 bases:

>100_bases
GAGCCGGATGCGGGAATTCCGCTTGTCCGGATCTGTCCGGGGGGTGAGGGGTAACTCTTGTCCCTACCGGGATTTTAAAT
ATGGACGGGATAAGCGCCTG

Product: RNA-directed DNA polymerase (Reverse transcriptase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MMYGTEKSDLPILPEKRANKAGKPVAEFVEGRGGNKRNAELQSMARTQGREAVFQAQGRIREAVTRNRGEKLTALLHHIS
VDCLRWSYFELKKTAATGVDGITWKDYGEGLEENLADLHRRIHTGAYRAQPSRRKYIPKANGQQRPLGIAALEDKIVQRA
VVAILTPIYEAEFLGFSYGFRPGRSQHDALDALAYGIKVKKIGWVLDADISRFFDTISHEWMIRFLEHRIGDKRIVRLII
KWLKAGVLEDSVRIEAEEGTPQGAVISPLLANIYLHYAYDLWAKQWREKHCKGDMIVVRFADDSVAGFQNKEDGERFLAD
LKERLAKFALTLHPEKTRLIEFGRYAAKNRQRRGQGRPETFDFLGFTHICGEKVVGKGFQLLRKTKRGSVRTKLGEVKKE
LRRRMHVSVSEQGKWLNSVLRGHYAYFAVPTNTRALSAFRYHVARRWMKSLRRRSQRHVMTWERMMIYIDQYLPNPKILH
PWPEQRFCVKHSS

Sequences:

>Translated_493_residues
MMYGTEKSDLPILPEKRANKAGKPVAEFVEGRGGNKRNAELQSMARTQGREAVFQAQGRIREAVTRNRGEKLTALLHHIS
VDCLRWSYFELKKTAATGVDGITWKDYGEGLEENLADLHRRIHTGAYRAQPSRRKYIPKANGQQRPLGIAALEDKIVQRA
VVAILTPIYEAEFLGFSYGFRPGRSQHDALDALAYGIKVKKIGWVLDADISRFFDTISHEWMIRFLEHRIGDKRIVRLII
KWLKAGVLEDSVRIEAEEGTPQGAVISPLLANIYLHYAYDLWAKQWREKHCKGDMIVVRFADDSVAGFQNKEDGERFLAD
LKERLAKFALTLHPEKTRLIEFGRYAAKNRQRRGQGRPETFDFLGFTHICGEKVVGKGFQLLRKTKRGSVRTKLGEVKKE
LRRRMHVSVSEQGKWLNSVLRGHYAYFAVPTNTRALSAFRYHVARRWMKSLRRRSQRHVMTWERMMIYIDQYLPNPKILH
PWPEQRFCVKHSS
>Mature_493_residues
MMYGTEKSDLPILPEKRANKAGKPVAEFVEGRGGNKRNAELQSMARTQGREAVFQAQGRIREAVTRNRGEKLTALLHHIS
VDCLRWSYFELKKTAATGVDGITWKDYGEGLEENLADLHRRIHTGAYRAQPSRRKYIPKANGQQRPLGIAALEDKIVQRA
VVAILTPIYEAEFLGFSYGFRPGRSQHDALDALAYGIKVKKIGWVLDADISRFFDTISHEWMIRFLEHRIGDKRIVRLII
KWLKAGVLEDSVRIEAEEGTPQGAVISPLLANIYLHYAYDLWAKQWREKHCKGDMIVVRFADDSVAGFQNKEDGERFLAD
LKERLAKFALTLHPEKTRLIEFGRYAAKNRQRRGQGRPETFDFLGFTHICGEKVVGKGFQLLRKTKRGSVRTKLGEVKKE
LRRRMHVSVSEQGKWLNSVLRGHYAYFAVPTNTRALSAFRYHVARRWMKSLRRRSQRHVMTWERMMIYIDQYLPNPKILH
PWPEQRFCVKHSS

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=166, Percent_Identity=36.144578313253, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6226520, Length=310, Percent_Identity=27.4193548387097, Blast_Score=107, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 57027; Mature: 57027

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMYGTEKSDLPILPEKRANKAGKPVAEFVEGRGGNKRNAELQSMARTQGREAVFQAQGRI
CCCCCCCCCCCCCCCHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
REAVTRNRGEKLTALLHHISVDCLRWSYFELKKTAATGVDGITWKDYGEGLEENLADLHR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHH
RIHTGAYRAQPSRRKYIPKANGQQRPLGIAALEDKIVQRAVVAILTPIYEAEFLGFSYGF
HHHCCHHCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPGRSQHDALDALAYGIKVKKIGWVLDADISRFFDTISHEWMIRFLEHRIGDKRIVRLII
CCCCCHHHHHHHHHHCCEEEHHCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
KWLKAGVLEDSVRIEAEEGTPQGAVISPLLANIYLHYAYDLWAKQWREKHCKGDMIVVRF
HHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
ADDSVAGFQNKEDGERFLADLKERLAKFALTLHPEKTRLIEFGRYAAKNRQRRGQGRPET
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
FDFLGFTHICGEKVVGKGFQLLRKTKRGSVRTKLGEVKKELRRRMHVSVSEQGKWLNSVL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RGHYAYFAVPTNTRALSAFRYHVARRWMKSLRRRSQRHVMTWERMMIYIDQYLPNPKILH
HCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PWPEQRFCVKHSS
CCCCCCEECCCCC
>Mature Secondary Structure
MMYGTEKSDLPILPEKRANKAGKPVAEFVEGRGGNKRNAELQSMARTQGREAVFQAQGRI
CCCCCCCCCCCCCCCHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
REAVTRNRGEKLTALLHHISVDCLRWSYFELKKTAATGVDGITWKDYGEGLEENLADLHR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHH
RIHTGAYRAQPSRRKYIPKANGQQRPLGIAALEDKIVQRAVVAILTPIYEAEFLGFSYGF
HHHCCHHCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPGRSQHDALDALAYGIKVKKIGWVLDADISRFFDTISHEWMIRFLEHRIGDKRIVRLII
CCCCCHHHHHHHHHHCCEEEHHCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
KWLKAGVLEDSVRIEAEEGTPQGAVISPLLANIYLHYAYDLWAKQWREKHCKGDMIVVRF
HHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
ADDSVAGFQNKEDGERFLADLKERLAKFALTLHPEKTRLIEFGRYAAKNRQRRGQGRPET
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
FDFLGFTHICGEKVVGKGFQLLRKTKRGSVRTKLGEVKKELRRRMHVSVSEQGKWLNSVL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RGHYAYFAVPTNTRALSAFRYHVARRWMKSLRRRSQRHVMTWERMMIYIDQYLPNPKILH
HCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PWPEQRFCVKHSS
CCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]