| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119358360
Identifier: 119358360
GI number: 119358360
Start: 2968727
End: 2970553
Strand: Reverse
Name: 119358360
Synonym: Cpha266_2592
Alternate gene names: NA
Gene position: 2970553-2968727 (Counterclockwise)
Preceding gene: 119358361
Following gene: 119358359
Centisome position: 94.79
GC content: 49.04
Gene sequence:
>1827_bases ATGGCTTATTTTAATCACGTTTGTCTTGTTGAGGCTCCTCAGGCGATTATTACGCCTTTTCCCCGGTTTATTACTGATTG TATCGGTATCTGTTATCTTGCCGCGGCGGTTGAGGATGTTGTTGATAGTATCGTGATTCCTGAGAATTATTATAACGACG GCTTGTTTGAAAGTTTTCGTTTGTTGCTGAAGAGGCAACCGGTGGATCTTGTGGGGATCTCTTCAATGACCGGTTGTTTT AATAATGCGACGAGACTTGCCGAGATTGCCAGGGAGCATGGTGCTTTTGTGGTTATGGGGGGGTTTCATCCTACGGCTCT TCCTGAAGAGGTGTTGAAACTTTCATGCGTCGATGCGGTGGTGATCGGGGAGGGTGAGGCTACGTTCAGGGAGCTGGTGC TGAAGGGGCCTTCCCGGGAGGTTAAAGGGCTTGCTTTCAGGGATAACGGGGGGGTTGTGTATACCGGCGTGCGGGAGATT ATCGGCGATATTGATTCGATAGCGTTTCCTTTGCGCAGTCTGCGTCCTCTCCGGTATGGGGAGAGCGGGTCGAATTATTC TATTGATACGATTTATACTTCTCGAGGTTGTCCCTGGTCGTGTTCGTTTTGCGCTAATGATCAGATGCATAAGAACTGGC GGGGTAGAAGCGCGGAGAATGTTGTTGATGAAATCGCTCTGTTGCATGATCCGAAAAAGAAGAAGCTGCTCAAGATCTGG GATGCGAATTTTCTGACGAATATCAAGCGGGCGGAGGCTATCTGCGATTTGATGATCGATCGGGGGTTGACCAATTTCAG GATCATGACGGAGACAAGGGCAAAGGATCTGATCAGGGCGGAACGGATTCTGGATAAGCTTCATCGAGTGGGGTTGAGCA AGGTGGGGCTCGGTATCGAGAGTCCTAATCCTGAAATTCTTGCGATGATGAACAAGAAGAATGTGCTTGACGATGTTTCG ACGGCTATTGATCTTTTGCGGAAGCATCGCGTTGGCGCCGAGGGGTATTTTATTATCGGTCATTATACGGAGTCTGTCGA GGATACCGTTGTGTATCCTGAGTTTGCCAAGGGGCTTGGCCTGAAGCAGGCTTTGTTTATGGCGATGACTCCCTATCCTG GTACGAAAATATTCGAGGAGTATAAGAGAGAGGAGAAGATTACTTCGTATGACTGGGATCTGTATAATAATTTCTGTCCG GTTGTGGAAACCAGGAGTATGGATAATGCCACGTTGATGAAGATGATGGTTTATTGTAATGTGGCGTTCTGCAATTACTG GTCGGTCATGAAGAGAAATAGTGCCGGCGCTGTTCTTATTGTTATGATGAAGGATCTTTTTCAGCTTTGTCTGCTTTTGC GGGTTAACAAGAATGTTGGGGAGGAGCAGGTTAGCAGCGCTATTTTTGAGGCTTTTGAGCGGTATCTTGCTACGAAACCT GTTCTGGAGTATCGGGGCAAGGCTTCTTTGAAGCCATTGGCGCGCCCTCTTGTGGTGACGGTTGAGCACTCTCCGGGTCG TTCGATTGCGTTTGTTATCAGCCAGGATGGCGATAAACGGGTGCTTTCGCTGGTGGATAGGAGGGGGGGCGCTGTTGCCG AGGGTCCGGTGATCAGGCTCGATGAGCTTATTGCCTGCGCGAACTGTATTTCCATGGATAGCTTGATGCGTCTGCTTTCG ATGAACGAGTTATTGAGAAATAATCCCGGAAGGAAAAACGAGCTGCTGTTTTCGGTGCTTCAGGACAGGGACGCCTGGCG TCTTTCAAGAAGGTTGCTTATGCTTTATTCCGGTTCGTTTACAAGGCGTGCCGGAGCGCGGGCATAG
Upstream 100 bases:
>100_bases GATTGGCGGGTTCGTTGTTTTTCCTGTGATTCTGCTGCGTTGTGGTTTGTGTTGTTGTTGTCTTTTTCCGATAATCGGCT AACGGTTAGTGTTCCTTCTT
Downstream 100 bases:
>100_bases GGTTTTTACTGCCGGAAGGCGGAATTCAAAGGAATGGCGATGATCGAGGCTGTGTTATGGGATAATGATGGTTTGCTTGT CGATAGTGAGGCGATGTTTT
Product: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 608; Mature: 607
Protein sequence:
>608_residues MAYFNHVCLVEAPQAIITPFPRFITDCIGICYLAAAVEDVVDSIVIPENYYNDGLFESFRLLLKRQPVDLVGISSMTGCF NNATRLAEIAREHGAFVVMGGFHPTALPEEVLKLSCVDAVVIGEGEATFRELVLKGPSREVKGLAFRDNGGVVYTGVREI IGDIDSIAFPLRSLRPLRYGESGSNYSIDTIYTSRGCPWSCSFCANDQMHKNWRGRSAENVVDEIALLHDPKKKKLLKIW DANFLTNIKRAEAICDLMIDRGLTNFRIMTETRAKDLIRAERILDKLHRVGLSKVGLGIESPNPEILAMMNKKNVLDDVS TAIDLLRKHRVGAEGYFIIGHYTESVEDTVVYPEFAKGLGLKQALFMAMTPYPGTKIFEEYKREEKITSYDWDLYNNFCP VVETRSMDNATLMKMMVYCNVAFCNYWSVMKRNSAGAVLIVMMKDLFQLCLLLRVNKNVGEEQVSSAIFEAFERYLATKP VLEYRGKASLKPLARPLVVTVEHSPGRSIAFVISQDGDKRVLSLVDRRGGAVAEGPVIRLDELIACANCISMDSLMRLLS MNELLRNNPGRKNELLFSVLQDRDAWRLSRRLLMLYSGSFTRRAGARA
Sequences:
>Translated_608_residues MAYFNHVCLVEAPQAIITPFPRFITDCIGICYLAAAVEDVVDSIVIPENYYNDGLFESFRLLLKRQPVDLVGISSMTGCF NNATRLAEIAREHGAFVVMGGFHPTALPEEVLKLSCVDAVVIGEGEATFRELVLKGPSREVKGLAFRDNGGVVYTGVREI IGDIDSIAFPLRSLRPLRYGESGSNYSIDTIYTSRGCPWSCSFCANDQMHKNWRGRSAENVVDEIALLHDPKKKKLLKIW DANFLTNIKRAEAICDLMIDRGLTNFRIMTETRAKDLIRAERILDKLHRVGLSKVGLGIESPNPEILAMMNKKNVLDDVS TAIDLLRKHRVGAEGYFIIGHYTESVEDTVVYPEFAKGLGLKQALFMAMTPYPGTKIFEEYKREEKITSYDWDLYNNFCP VVETRSMDNATLMKMMVYCNVAFCNYWSVMKRNSAGAVLIVMMKDLFQLCLLLRVNKNVGEEQVSSAIFEAFERYLATKP VLEYRGKASLKPLARPLVVTVEHSPGRSIAFVISQDGDKRVLSLVDRRGGAVAEGPVIRLDELIACANCISMDSLMRLLS MNELLRNNPGRKNELLFSVLQDRDAWRLSRRLLMLYSGSFTRRAGARA >Mature_607_residues AYFNHVCLVEAPQAIITPFPRFITDCIGICYLAAAVEDVVDSIVIPENYYNDGLFESFRLLLKRQPVDLVGISSMTGCFN NATRLAEIAREHGAFVVMGGFHPTALPEEVLKLSCVDAVVIGEGEATFRELVLKGPSREVKGLAFRDNGGVVYTGVREII GDIDSIAFPLRSLRPLRYGESGSNYSIDTIYTSRGCPWSCSFCANDQMHKNWRGRSAENVVDEIALLHDPKKKKLLKIWD ANFLTNIKRAEAICDLMIDRGLTNFRIMTETRAKDLIRAERILDKLHRVGLSKVGLGIESPNPEILAMMNKKNVLDDVST AIDLLRKHRVGAEGYFIIGHYTESVEDTVVYPEFAKGLGLKQALFMAMTPYPGTKIFEEYKREEKITSYDWDLYNNFCPV VETRSMDNATLMKMMVYCNVAFCNYWSVMKRNSAGAVLIVMMKDLFQLCLLLRVNKNVGEEQVSSAIFEAFERYLATKPV LEYRGKASLKPLARPLVVTVEHSPGRSIAFVISQDGDKRVLSLVDRRGGAVAEGPVIRLDELIACANCISMDSLMRLLSM NELLRNNPGRKNELLFSVLQDRDAWRLSRRLLMLYSGSFTRRAGARA
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 68332; Mature: 68201
Theoretical pI: Translated: 8.03; Mature: 8.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYFNHVCLVEAPQAIITPFPRFITDCIGICYLAAAVEDVVDSIVIPENYYNDGLFESFR CCCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHH LLLKRQPVDLVGISSMTGCFNNATRLAEIAREHGAFVVMGGFHPTALPEEVLKLSCVDAV HHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCEE VIGEGEATFRELVLKGPSREVKGLAFRDNGGVVYTGVREIIGDIDSIAFPLRSLRPLRYG EECCCHHHHHHHHHCCCCCCCCEEEEECCCCEEEECHHHHHCCHHHHHHHHHHCCCCCCC ESGSNYSIDTIYTSRGCPWSCSFCANDQMHKNWRGRSAENVVDEIALLHDPKKKKLLKIW CCCCCEEEEEEEECCCCCEECCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHH DANFLTNIKRAEAICDLMIDRGLTNFRIMTETRAKDLIRAERILDKLHRVGLSKVGLGIE CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC SPNPEILAMMNKKNVLDDVSTAIDLLRKHRVGAEGYFIIGHYTESVEDTVVYPEFAKGLG CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECHHHHHCCC LKQALFMAMTPYPGTKIFEEYKREEKITSYDWDLYNNFCPVVETRSMDNATLMKMMVYCN HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCEECCCCCHHHHHHHHHHHH VAFCNYWSVMKRNSAGAVLIVMMKDLFQLCLLLRVNKNVGEEQVSSAIFEAFERYLATKP HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC VLEYRGKASLKPLARPLVVTVEHSPGRSIAFVISQDGDKRVLSLVDRRGGAVAEGPVIRL HHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHH DELIACANCISMDSLMRLLSMNELLRNNPGRKNELLFSVLQDRDAWRLSRRLLMLYSGSF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC TRRAGARA CCCCCCCC >Mature Secondary Structure AYFNHVCLVEAPQAIITPFPRFITDCIGICYLAAAVEDVVDSIVIPENYYNDGLFESFR CCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHH LLLKRQPVDLVGISSMTGCFNNATRLAEIAREHGAFVVMGGFHPTALPEEVLKLSCVDAV HHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCEE VIGEGEATFRELVLKGPSREVKGLAFRDNGGVVYTGVREIIGDIDSIAFPLRSLRPLRYG EECCCHHHHHHHHHCCCCCCCCEEEEECCCCEEEECHHHHHCCHHHHHHHHHHCCCCCCC ESGSNYSIDTIYTSRGCPWSCSFCANDQMHKNWRGRSAENVVDEIALLHDPKKKKLLKIW CCCCCEEEEEEEECCCCCEECCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHH DANFLTNIKRAEAICDLMIDRGLTNFRIMTETRAKDLIRAERILDKLHRVGLSKVGLGIE CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC SPNPEILAMMNKKNVLDDVSTAIDLLRKHRVGAEGYFIIGHYTESVEDTVVYPEFAKGLG CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECHHHHHCCC LKQALFMAMTPYPGTKIFEEYKREEKITSYDWDLYNNFCPVVETRSMDNATLMKMMVYCN HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCEECCCCCHHHHHHHHHHHH VAFCNYWSVMKRNSAGAVLIVMMKDLFQLCLLLRVNKNVGEEQVSSAIFEAFERYLATKP HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC VLEYRGKASLKPLARPLVVTVEHSPGRSIAFVISQDGDKRVLSLVDRRGGAVAEGPVIRL HHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHH DELIACANCISMDSLMRLLSMNELLRNNPGRKNELLFSVLQDRDAWRLSRRLLMLYSGSF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC TRRAGARA CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9679194 [H]