Click here to switch to the map view.

The map label for this gene is 119358265

Identifier: 119358265

GI number: 119358265

Start: 2864311

End: 2864823

Strand: Direct

Name: 119358265

Synonym: Cpha266_2497

Alternate gene names: NA

Gene position: 2864311-2864823 (Clockwise)

Preceding gene: 119358264

Following gene: 119358266

Centisome position: 91.4

GC content: 47.76

Gene sequence:

>513_bases
ATGCCGTTGAAACGATCAAAAGTTCTTGTCCTGAACAGCAGCTATGCGCCTTTAAGCATATGTGACGCACAGAAAGCAGT
CCTGATGCTTTTCTGCGGAAAAGCCGTGTCGGTGGCTAATCATCCCGAAAAAGTCATCTGCACGATTTCCAGCAGCTTTC
CCCTGCCAACGATCGTACGGCTCACGTTTTTTGTGCGTGTTCCTTTTAAAAAAATCATGTTGAACCGGAAGAACATTCTA
CGAAGAGACAATTTTCAATGCCAGTATTGCGGGCGGACAGACCAGCCCATGACGATAGATCACATCGTGCCCCGTTCGAA
AGGCGGTGAAGATTCATGGGAGAACCTTATCACCGCCTGCCCTGCCTGCAATACAAAAAAAGGAAACAGAACCCTTGCTG
AAGCAGAAATAACCGCACTGAAACAGCCGACCCGTCCTAACCATCTCCTGTTCCTGCAGCAATGGATCGCTACGGTCTAT
GATGAATGGAAACCTTACCTTTTCATGAGTTGA

Upstream 100 bases:

>100_bases
CAAGATCTTTTACAGGAAGTGCCAAAAATTAACCAAATGTTCACCGCAATGGATCCAGGTTGTCGACCTATACTGTTATA
CTGTATAAAACACTTTGGCT

Downstream 100 bases:

>100_bases
ATAACCTCTCTCGCGCACCTCATACATGACATTGATGCACATATCTCTTCCTGACATTATTCTCCCTCCACATATACGGG
ACTTTATCGAATCCGGACCT

Product: HNH endonuclease

Products: NA

Alternate protein names: HNH Endonuclease Family Protein; Endonuclease; HNH Endonuclease Domain Protein; Restriction Endonuclease; HNH Endonuclease Domain-Containing Protein; HNH Nuclease; Hnh Endonuclease; McrA/HNH Family Nuclease; 5-Methylcytosine-Specific Restriction A; 5-Methylcytosine-Specific Restriction Protein; Restriction Endonuclease McrA/HNH Family; HNH EndonucleaseHNH Nuclease; HNH Family Endonuclease; LOW QUALITY PROTEIN Endonuclease; Hnh Endonuclease Domain Protein; 5-Methylcytosine-Specific Restriction Protein A

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MPLKRSKVLVLNSSYAPLSICDAQKAVLMLFCGKAVSVANHPEKVICTISSSFPLPTIVRLTFFVRVPFKKIMLNRKNIL
RRDNFQCQYCGRTDQPMTIDHIVPRSKGGEDSWENLITACPACNTKKGNRTLAEAEITALKQPTRPNHLLFLQQWIATVY
DEWKPYLFMS

Sequences:

>Translated_170_residues
MPLKRSKVLVLNSSYAPLSICDAQKAVLMLFCGKAVSVANHPEKVICTISSSFPLPTIVRLTFFVRVPFKKIMLNRKNIL
RRDNFQCQYCGRTDQPMTIDHIVPRSKGGEDSWENLITACPACNTKKGNRTLAEAEITALKQPTRPNHLLFLQQWIATVY
DEWKPYLFMS
>Mature_169_residues
PLKRSKVLVLNSSYAPLSICDAQKAVLMLFCGKAVSVANHPEKVICTISSSFPLPTIVRLTFFVRVPFKKIMLNRKNILR
RDNFQCQYCGRTDQPMTIDHIVPRSKGGEDSWENLITACPACNTKKGNRTLAEAEITALKQPTRPNHLLFLQQWIATVYD
EWKPYLFMS

Specific function: Unknown

COG id: COG1403

COG function: function code V; Restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19375; Mature: 19244

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLKRSKVLVLNSSYAPLSICDAQKAVLMLFCGKAVSVANHPEKVICTISSSFPLPTIVR
CCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHCCHHCCCCCCCEEEEEECCCCCCHHHHH
LTFFVRVPFKKIMLNRKNILRRDNFQCQYCGRTDQPMTIDHIVPRSKGGEDSWENLITAC
HHHHHHCCHHHHHHCHHHHHHCCCCEEEECCCCCCCEEHHHCCCCCCCCCHHHHHHHHHC
PACNTKKGNRTLAEAEITALKQPTRPNHLLFLQQWIATVYDEWKPYLFMS
CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEECC
>Mature Secondary Structure 
PLKRSKVLVLNSSYAPLSICDAQKAVLMLFCGKAVSVANHPEKVICTISSSFPLPTIVR
CCCCCEEEEEECCCCCEEEHHHHHHHHHHHHCCHHCCCCCCCEEEEEECCCCCCHHHHH
LTFFVRVPFKKIMLNRKNILRRDNFQCQYCGRTDQPMTIDHIVPRSKGGEDSWENLITAC
HHHHHHCCHHHHHHCHHHHHHCCCCEEEECCCCCCCEEHHHCCCCCCCCCHHHHHHHHHC
PACNTKKGNRTLAEAEITALKQPTRPNHLLFLQQWIATVYDEWKPYLFMS
CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA