Click here to switch to the map view.

The map label for this gene is ssb1 [H]

Identifier: 119358075

GI number: 119358075

Start: 2636332

End: 2636847

Strand: Direct

Name: ssb1 [H]

Synonym: Cpha266_2303

Alternate gene names: 119358075

Gene position: 2636332-2636847 (Clockwise)

Preceding gene: 119358074

Following gene: 119358076

Centisome position: 84.12

GC content: 53.1

Gene sequence:

>516_bases
ATGGCAAAAGGACTCAACAAGGTCATGCTGATAGGCCACCTCGGCGGCGACCCTGAAAGCAGAAACACGGCATCGGGACA
AACCGTCACCAACTTCACACTCGCAACAACAGAAAGCTTCAAGGACGCGACAGGAACATGGCAGGAAAAAACTGAATGGC
ACCGCATTGTAACCTGGGGAAAGCTTGCCGAAATATGCAGCCAGTACCTTAAAAAAGGTCGACAGGTCTATGTCGAAGGC
AGATTACAGACCAGAAGCTGGGACGACCAGAAAAGCGGCGAAAAAAAATATACCACTGAAATCGTCTGTACCGACATGCA
GATGCTCGGTTCAGCACGCGATCAGGGAACCGGAAACGGCGGCCAGGGAGGCGCTGCGGACACCGGCATGTCAGGCTATG
ATCGCTCACCCCGGTACACCACAGCTCCAAAAGGAACTTCCACAGGATCAGGCGACTACCCGCAGCAATCCTCAGGCCCA
ATGATTGAAAGCGAAAAAGATGACCTCCCGTTCTGA

Upstream 100 bases:

>100_bases
TTTATAACTCTACTTTTATTCTTATCATCGAAAAAAGAACAGCTCTCAGTATCCAATATTTTTACTTTTCTATACTAACG
CTAATCCGGGAACAGATACT

Downstream 100 bases:

>100_bases
AAAAAAAAACCGGGATGACGGAGAAATCGCTCCCGTATATTTCCTTACAGGCACTGAAGAGTACCTTAAGGAAGAACTCA
CCGGACGGATCAGGAACACC

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB 1; Helix-destabilizing protein 1 [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MAKGLNKVMLIGHLGGDPESRNTASGQTVTNFTLATTESFKDATGTWQEKTEWHRIVTWGKLAEICSQYLKKGRQVYVEG
RLQTRSWDDQKSGEKKYTTEIVCTDMQMLGSARDQGTGNGGQGGAADTGMSGYDRSPRYTTAPKGTSTGSGDYPQQSSGP
MIESEKDDLPF

Sequences:

>Translated_171_residues
MAKGLNKVMLIGHLGGDPESRNTASGQTVTNFTLATTESFKDATGTWQEKTEWHRIVTWGKLAEICSQYLKKGRQVYVEG
RLQTRSWDDQKSGEKKYTTEIVCTDMQMLGSARDQGTGNGGQGGAADTGMSGYDRSPRYTTAPKGTSTGSGDYPQQSSGP
MIESEKDDLPF
>Mature_170_residues
AKGLNKVMLIGHLGGDPESRNTASGQTVTNFTLATTESFKDATGTWQEKTEWHRIVTWGKLAEICSQYLKKGRQVYVEGR
LQTRSWDDQKSGEKKYTTEIVCTDMQMLGSARDQGTGNGGQGGAADTGMSGYDRSPRYTTAPKGTSTGSGDYPQQSSGPM
IESEKDDLPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=108, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=5e-11,
Organism=Escherichia coli, GI1790494, Length=179, Percent_Identity=45.8100558659218, Blast_Score=134, Evalue=4e-33,
Organism=Drosophila melanogaster, GI85725234, Length=115, Percent_Identity=32.1739130434783, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24647376, Length=115, Percent_Identity=32.1739130434783, Blast_Score=70, Evalue=9e-13,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 18617; Mature: 18486

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGLNKVMLIGHLGGDPESRNTASGQTVTNFTLATTESFKDATGTWQEKTEWHRIVTWG
CCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
KLAEICSQYLKKGRQVYVEGRLQTRSWDDQKSGEKKYTTEIVCTDMQMLGSARDQGTGNG
HHHHHHHHHHHCCCEEEEECEEECCCCCCCCCCCCCEEHEEEEHHHHHHHCCCCCCCCCC
GQGGAADTGMSGYDRSPRYTTAPKGTSTGSGDYPQQSSGPMIESEKDDLPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKGLNKVMLIGHLGGDPESRNTASGQTVTNFTLATTESFKDATGTWQEKTEWHRIVTWG
CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
KLAEICSQYLKKGRQVYVEGRLQTRSWDDQKSGEKKYTTEIVCTDMQMLGSARDQGTGNG
HHHHHHHHHHHCCCEEEEECEEECCCCCCCCCCCCCEEHEEEEHHHHHHHCCCCCCCCCC
GQGGAADTGMSGYDRSPRYTTAPKGTSTGSGDYPQQSSGPMIESEKDDLPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]