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The map label for this gene is csmJ [H]

Identifier: 119356704

GI number: 119356704

Start: 998213

End: 998881

Strand: Reverse

Name: csmJ [H]

Synonym: Cpha266_0876

Alternate gene names: 119356704

Gene position: 998881-998213 (Counterclockwise)

Preceding gene: 119356705

Following gene: 119356703

Centisome position: 31.87

GC content: 45.89

Gene sequence:

>669_bases
ATGATCATCTATGTTAACGACAAACCGTGCGAGACCAGGGTTGGTGATCTGCTCCTTAGTGTTGCACAACATCATAAAAG
CCATATCGGTTATATTTGCGGCGGTAACGGAATCTGCCAGAGCTGTTTTGTTTATGTAAAAGAAGGATCGGAGTACCTTT
CGGATCCTGGTGAAGAAGAAAAAACTTTTATTTCAGCCAAATTACTCAATGAGGGCGGAAGACTTGCCTGCAGAACCACG
ATTAAAAAAGAGGGCAGAATATCGGTTCTTTCAAGGGCTGAATATCTCCGAAGAATAGTTGTGGGGCTTAATGTTCCCGG
TTTTATAACCTATGCGCAAACAATCGGGGACAATGTTCTCAACCAGCTTCCCGGTGGTGTGGTAAACGTGTTTTCGAGAG
TCAGGGATGGCAGAATAAATCCGGCAAAAACCCTCGGAAAAATCGGTGACGGTCTTGGCCATGCCTCACTTCTCGCAATG
AGTACGTTTCTGGAAACGTTCCCTTTTATGCAGGGTCCGGTATCTATTGCATCTGACAGCTTCAAGGGTCTGGCTGATAC
GGCATCGAAGGCCATATGCTCCGTACCAGGACTCGCCGCAACCGTGTGCCGGAAAAATGATGCCGACAAGCTGCCCATTG
TTGAAACAATAAAAATTACAGCAAAATAA

Upstream 100 bases:

>100_bases
CTCACCTGAAGGGTGAAAAAGAGGTGATTGAGTGAAGAATCTAATTGCTTATATTCATCCATAATGTTCCCCTTGTTTTT
TAAGGATAAACACAACGATC

Downstream 100 bases:

>100_bases
GTGCAACTGCCCCCTGACGTGAAGGTTCCTCCCACCTTTCCTTGCGACAGAAGGCGAAACCATTTTACCCGATTTGCTTG
ATGGGATACAGTGGTGATAC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MIIYVNDKPCETRVGDLLLSVAQHHKSHIGYICGGNGICQSCFVYVKEGSEYLSDPGEEEKTFISAKLLNEGGRLACRTT
IKKEGRISVLSRAEYLRRIVVGLNVPGFITYAQTIGDNVLNQLPGGVVNVFSRVRDGRINPAKTLGKIGDGLGHASLLAM
STFLETFPFMQGPVSIASDSFKGLADTASKAICSVPGLAATVCRKNDADKLPIVETIKITAK

Sequences:

>Translated_222_residues
MIIYVNDKPCETRVGDLLLSVAQHHKSHIGYICGGNGICQSCFVYVKEGSEYLSDPGEEEKTFISAKLLNEGGRLACRTT
IKKEGRISVLSRAEYLRRIVVGLNVPGFITYAQTIGDNVLNQLPGGVVNVFSRVRDGRINPAKTLGKIGDGLGHASLLAM
STFLETFPFMQGPVSIASDSFKGLADTASKAICSVPGLAATVCRKNDADKLPIVETIKITAK
>Mature_222_residues
MIIYVNDKPCETRVGDLLLSVAQHHKSHIGYICGGNGICQSCFVYVKEGSEYLSDPGEEEKTFISAKLLNEGGRLACRTT
IKKEGRISVLSRAEYLRRIVVGLNVPGFITYAQTIGDNVLNQLPGGVVNVFSRVRDGRINPAKTLGKIGDGLGHASLLAM
STFLETFPFMQGPVSIASDSFKGLADTASKAICSVPGLAATVCRKNDADKLPIVETIKITAK

Specific function: Could play a direct role in the oxidation or reduction of the quenching species formed in the chlorosome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Chlorosome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 23834; Mature: 23834

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIYVNDKPCETRVGDLLLSVAQHHKSHIGYICGGNGICQSCFVYVKEGSEYLSDPGEEE
CEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHCCHHHHCCCCCHH
KTFISAKLLNEGGRLACRTTIKKEGRISVLSRAEYLRRIVVGLNVPGFITYAQTIGDNVL
HHHHHHHHHCCCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
NQLPGGVVNVFSRVRDGRINPAKTLGKIGDGLGHASLLAMSTFLETFPFMQGPVSIASDS
HHCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCC
FKGLADTASKAICSVPGLAATVCRKNDADKLPIVETIKITAK
CHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MIIYVNDKPCETRVGDLLLSVAQHHKSHIGYICGGNGICQSCFVYVKEGSEYLSDPGEEE
CEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHCCHHHHCCCCCHH
KTFISAKLLNEGGRLACRTTIKKEGRISVLSRAEYLRRIVVGLNVPGFITYAQTIGDNVL
HHHHHHHHHCCCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
NQLPGGVVNVFSRVRDGRINPAKTLGKIGDGLGHASLLAMSTFLETFPFMQGPVSIASDS
HHCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCC
FKGLADTASKAICSVPGLAATVCRKNDADKLPIVETIKITAK
CHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11148041; 12093901 [H]