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The map label for this gene is csmI [H]

Identifier: 119356705

GI number: 119356705

Start: 999093

End: 999803

Strand: Reverse

Name: csmI [H]

Synonym: Cpha266_0877

Alternate gene names: 119356705

Gene position: 999803-999093 (Counterclockwise)

Preceding gene: 119356706

Following gene: 119356704

Centisome position: 31.9

GC content: 44.87

Gene sequence:

>711_bases
ATGGCGTTAATATCAAGGAACAAAATCAAAATCCATAGAACCATGAAGATCACAATAAATGAACGATCGTGCGAGGCTAA
TACAGGCGACAAGCTTCTTGATGCAGCGCGGAAAAATCACGCCCATATCGGTTATTTCTGCGGTGGAAACGGAATATGCC
AGACCTGCTACGTTAAAGTACTTGAAGGCGGGGAACTCCTTTCACCTTTGAGCGAGCCTGAAAAAGCGATGCTTTCTGAC
ACTCTCATCAGGGAAGGCACAAGAATGGCATGTCTTGCAACGATCGAAAAACCAGGAACGATAAAGATACTCTCATCCAT
AGAAGAGGTAAAACAGATATATGAACAAAATCCCCTGCAGCTTACCCTTTATGCGGCAAAAATGGGTTGGGAAGCTCTTG
TGAAATTTCCTGAAACCGTCATACTTCAGACGGAAAGAATCATCAACGGCAAACTTGATGTCTGGCAACTGTTTACTGAT
ATTATCGGCAGTATTGGCGAGGTGGTTCAGGTTGTTGTTCAGTCAATACAGGGAGATTCAGCAGGGGAAGAAAAGAATGC
TTTGTCAGAAAACAACATCACAGAAACCCCCCGAACTCATAACGTTGCAGGCCTCACCCTTGAAAGCTGTGGATGCAAGA
GTTATGGAAACAGGAAAACTCTTCCGCACACCATAAAAACACATGGCGCTCATAACGGGGTGCCCGCTTGA

Upstream 100 bases:

>100_bases
AAGCATCTCCCCTGCCCCGTTCTGACAGGATCATCCCCATCTCACTTTTTTTTATCCTTCAATGCAACTTTTAGCAATTG
ATAACAATTGTGAAAGATAA

Downstream 100 bases:

>100_bases
ACCACCACAAACACAAAAGGCCTGATTTTCAGGCCTTTTGTGTTTGTGAATCACTTGAGAATTCTTTCGGACAGCTTTGC
GGTACCGCTCCTTCCGTTTC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MALISRNKIKIHRTMKITINERSCEANTGDKLLDAARKNHAHIGYFCGGNGICQTCYVKVLEGGELLSPLSEPEKAMLSD
TLIREGTRMACLATIEKPGTIKILSSIEEVKQIYEQNPLQLTLYAAKMGWEALVKFPETVILQTERIINGKLDVWQLFTD
IIGSIGEVVQVVVQSIQGDSAGEEKNALSENNITETPRTHNVAGLTLESCGCKSYGNRKTLPHTIKTHGAHNGVPA

Sequences:

>Translated_236_residues
MALISRNKIKIHRTMKITINERSCEANTGDKLLDAARKNHAHIGYFCGGNGICQTCYVKVLEGGELLSPLSEPEKAMLSD
TLIREGTRMACLATIEKPGTIKILSSIEEVKQIYEQNPLQLTLYAAKMGWEALVKFPETVILQTERIINGKLDVWQLFTD
IIGSIGEVVQVVVQSIQGDSAGEEKNALSENNITETPRTHNVAGLTLESCGCKSYGNRKTLPHTIKTHGAHNGVPA
>Mature_235_residues
ALISRNKIKIHRTMKITINERSCEANTGDKLLDAARKNHAHIGYFCGGNGICQTCYVKVLEGGELLSPLSEPEKAMLSDT
LIREGTRMACLATIEKPGTIKILSSIEEVKQIYEQNPLQLTLYAAKMGWEALVKFPETVILQTERIINGKLDVWQLFTDI
IGSIGEVVQVVVQSIQGDSAGEEKNALSENNITETPRTHNVAGLTLESCGCKSYGNRKTLPHTIKTHGAHNGVPA

Specific function: Could play a direct role in the oxidation or reduction of the quenching species formed in the chlorosome [H]

COG id: COG2871

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF

Gene ontology:

Cell location: Chlorosome [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 25856; Mature: 25725

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALISRNKIKIHRTMKITINERSCEANTGDKLLDAARKNHAHIGYFCGGNGICQTCYVKV
CCCCCCCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
LEGGELLSPLSEPEKAMLSDTLIREGTRMACLATIEKPGTIKILSSIEEVKQIYEQNPLQ
HCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCE
LTLYAAKMGWEALVKFPETVILQTERIINGKLDVWQLFTDIIGSIGEVVQVVVQSIQGDS
EEEEEEHHCHHHHHHCCHHHEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AGEEKNALSENNITETPRTHNVAGLTLESCGCKSYGNRKTLPHTIKTHGAHNGVPA
CCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure 
ALISRNKIKIHRTMKITINERSCEANTGDKLLDAARKNHAHIGYFCGGNGICQTCYVKV
CCCCCCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
LEGGELLSPLSEPEKAMLSDTLIREGTRMACLATIEKPGTIKILSSIEEVKQIYEQNPLQ
HCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCE
LTLYAAKMGWEALVKFPETVILQTERIINGKLDVWQLFTDIIGSIGEVVQVVVQSIQGDS
EEEEEEHHCHHHHHHCCHHHEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AGEEKNALSENNITETPRTHNVAGLTLESCGCKSYGNRKTLPHTIKTHGAHNGVPA
CCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 2Fe-2S Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11148041; 12093901 [H]