| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is ycdJ [C]
Identifier: 119356144
GI number: 119356144
Start: 335760
End: 336683
Strand: Reverse
Name: ycdJ [C]
Synonym: Cpha266_0302
Alternate gene names: 119356144
Gene position: 336683-335760 (Counterclockwise)
Preceding gene: 119356150
Following gene: 119356143
Centisome position: 10.74
GC content: 47.84
Gene sequence:
>924_bases ATGAGTTATTTAGCATCTTCACGTTGCAAACTCTACTATGAGGACAGCGCGGAAGCCAATCCCGCACATCTTGACAAACC GGCGGTACTGTTTGTCAACGGGTGGGCTATTTCGTCACGATACTGGAAACCTCTGGTTCAAGCGCTGTCCGGAAGTTTCC GCTGCATAATCTATGACCAGAGCGGTACGGGCAAAACGCTGATCAAGGGGCATAATCCGTCGTTTACCATACAGGGTTTT GCCGATGAAGCTGGAGAACTGATTGAACATCTCGGGCTCAACAAGTCAAGAAACCTGCATATCGTCGGACACTCGATGGG AGGAATGGTGGCTACGGAACTCTCCCTTCGTTATAAGACAGCTCTTGTTTCCTCAGCAATCATAGCCTGCGGAATTTTTG AGGAAACCGCATTTACATCCTTCGGGCTTTTCTTTCTTGGCGGTCTGATTGATGTTTCCATGAATTTCCGGAATGTTTTT CAAAGCGAGCCTTTTCGATCCATGTTTATAAAACGGGCTGCGACAAAGGAGATCGCCAAGGAGTACGGAGATATCATCAT CGAGGATTTCACACAGTCAGACAAGGATGCAACCAACGCCGCAGGTAAATTTTCTATCGATCCGGAAGCGCTCAGAGCCT ATACCCGTCATGTCATCGAGATTGCGTCCCCGGTTCTCTGCTGTGTAGGTATGGCTGACCATACTATCCCCCCGGAAGGA ACCATAACCCTGTTTGAAACCCGAAAAGCCCGATCTTCGGCACCAACAACCCTGGTACAGTTTATGAATCTCGGCCACTT GCCGATGCTTGAAGACACCGATAATTTTGCTGAAGCGCTGATAAAACACTTTGACTCTGCCAGAAAATTTCATGAAAACA ACTCAACCGAACCTGCTCGTTGCAAACAATACCAGATTTCATGA
Upstream 100 bases:
>100_bases CTCTTTTGATCGGGAGCGCTTAAGGGAATGAAGCGATAAGAAAAGTTATTATTGTTATATATTGAAGTTTTGTTTTCAGC TTAACAATTCTGTACTGACC
Downstream 100 bases:
>100_bases TTTTCATTACCGACTCACCCATGCCGACCTATGATAACCTTAAGAACGACTGTTACCGTGAATACTACTTTTTTTAAAAA ATCTTTTATTACTCTTGCCG
Product: alpha/beta hydrolase fold
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Esterase; Proline Iminopeptidase; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Fold-Containing Protein
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MSYLASSRCKLYYEDSAEANPAHLDKPAVLFVNGWAISSRYWKPLVQALSGSFRCIIYDQSGTGKTLIKGHNPSFTIQGF ADEAGELIEHLGLNKSRNLHIVGHSMGGMVATELSLRYKTALVSSAIIACGIFEETAFTSFGLFFLGGLIDVSMNFRNVF QSEPFRSMFIKRAATKEIAKEYGDIIIEDFTQSDKDATNAAGKFSIDPEALRAYTRHVIEIASPVLCCVGMADHTIPPEG TITLFETRKARSSAPTTLVQFMNLGHLPMLEDTDNFAEALIKHFDSARKFHENNSTEPARCKQYQIS
Sequences:
>Translated_307_residues MSYLASSRCKLYYEDSAEANPAHLDKPAVLFVNGWAISSRYWKPLVQALSGSFRCIIYDQSGTGKTLIKGHNPSFTIQGF ADEAGELIEHLGLNKSRNLHIVGHSMGGMVATELSLRYKTALVSSAIIACGIFEETAFTSFGLFFLGGLIDVSMNFRNVF QSEPFRSMFIKRAATKEIAKEYGDIIIEDFTQSDKDATNAAGKFSIDPEALRAYTRHVIEIASPVLCCVGMADHTIPPEG TITLFETRKARSSAPTTLVQFMNLGHLPMLEDTDNFAEALIKHFDSARKFHENNSTEPARCKQYQIS >Mature_306_residues SYLASSRCKLYYEDSAEANPAHLDKPAVLFVNGWAISSRYWKPLVQALSGSFRCIIYDQSGTGKTLIKGHNPSFTIQGFA DEAGELIEHLGLNKSRNLHIVGHSMGGMVATELSLRYKTALVSSAIIACGIFEETAFTSFGLFFLGGLIDVSMNFRNVFQ SEPFRSMFIKRAATKEIAKEYGDIIIEDFTQSDKDATNAAGKFSIDPEALRAYTRHVIEIASPVLCCVGMADHTIPPEGT ITLFETRKARSSAPTTLVQFMNLGHLPMLEDTDNFAEALIKHFDSARKFHENNSTEPARCKQYQIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34000; Mature: 33869
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYLASSRCKLYYEDSAEANPAHLDKPAVLFVNGWAISSRYWKPLVQALSGSFRCIIYDQ CCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECEEECHHHHHHHHHHHCCCEEEEEEEC SGTGKTLIKGHNPSFTIQGFADEAGELIEHLGLNKSRNLHIVGHSMGGMVATELSLRYKT CCCCCEEEECCCCCEEEEECHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHHHHHHHH ALVSSAIIACGIFEETAFTSFGLFFLGGLIDVSMNFRNVFQSEPFRSMFIKRAATKEIAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH EYGDIIIEDFTQSDKDATNAAGKFSIDPEALRAYTRHVIEIASPVLCCVGMADHTIPPEG HHCCEEEEHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TITLFETRKARSSAPTTLVQFMNLGHLPMLEDTDNFAEALIKHFDSARKFHENNSTEPAR CEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH CKQYQIS CCCCCCC >Mature Secondary Structure SYLASSRCKLYYEDSAEANPAHLDKPAVLFVNGWAISSRYWKPLVQALSGSFRCIIYDQ CCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECEEECHHHHHHHHHHHCCCEEEEEEEC SGTGKTLIKGHNPSFTIQGFADEAGELIEHLGLNKSRNLHIVGHSMGGMVATELSLRYKT CCCCCEEEECCCCCEEEEECHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHHHHHHHH ALVSSAIIACGIFEETAFTSFGLFFLGGLIDVSMNFRNVFQSEPFRSMFIKRAATKEIAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH EYGDIIIEDFTQSDKDATNAAGKFSIDPEALRAYTRHVIEIASPVLCCVGMADHTIPPEG HHCCEEEEHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TITLFETRKARSSAPTTLVQFMNLGHLPMLEDTDNFAEALIKHFDSARKFHENNSTEPAR CEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH CKQYQIS CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA