| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is ydfG [H]
Identifier: 118581357
GI number: 118581357
Start: 3222751
End: 3223512
Strand: Direct
Name: ydfG [H]
Synonym: Ppro_2952
Alternate gene names: 118581357
Gene position: 3222751-3223512 (Clockwise)
Preceding gene: 118581356
Following gene: 118581364
Centisome position: 80.41
GC content: 63.91
Gene sequence:
>762_bases ATGAACGAAAAAACAATCTTCATCACCGGCGCATCGGCCGGCTTCGGCGCAGCCTGCGCCCGCATCTTCTCCGCCCAGGG AAACCGGCTGATCCTGACGGCGCGCCGTAGCGACCCGCTGCTGACGCTGCAACGGGAGCTGTCCGGAAAAACGGAGGTGC ACGTGATTCCCCTGGATGTGCGTGACCGGGTGGCGGTGAAAGACGCCGTGGAGTCGCTCCCCGAGCGTTTCCGCGACATC GACGTGCTGATCAACAACGCCGGCCTGGCCCTGGGTCTGGAGCCGGCCCACAAGGTGGACCTGGACGACTGGGAGACCAT GGTGGACACCAACATCAAGGGGCTGATGTACTGCACCCGCCAGATCCTGCCCGGCATGGTGGCCCGCAACCGCGGCCATA TCGTCAACCTGGGCTCGGTGGCCGGCAGTTGGCCCTACCCGGGGGGCAACGTCTATGGTGGCACCAAGGCCTTCGTGGAG CAGTTCTCCTTGAACCTGCGCTGCGACCTGCTGGGAACCAGGGTGCGGGTGACCTGCATCCAGCCCGGCATGGCCGAGAC GGAGTTCTCCAAGGTCAGGTTCAAGGGGAATGAAAAGATGGCCTCCCAGGTCTACAGCGGTACCGAGGCGCTGACGGCCG AGGACATCGCCGAAACCATATACTGGGTGATCAACCGTCCCGAGCACGTCAATATCAACACCCTGGAGCTGATGTCCATC GACCAGGCCTGGAGCCCCTTCGCCGTCCACCGCCGGAAGTAG
Upstream 100 bases:
>100_bases AGAGAGGAGAAGTGAGCATACAATGCGTGGCCGCTGCCATGAGCGGCACCATGGCGGTTCTACCGAAAACAGGTCACGAC TACCAGGAGGGAGCTATCTC
Downstream 100 bases:
>100_bases TCCGCGCCGACCAGCCAGCGTTCCGGGCATTAACGGAACAGCCTTGAAACGAACAGGGCCCGCAAAAGCGGGCCCTGTTC GTTAAAATTCACGAATCTTC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MNEKTIFITGASAGFGAACARIFSAQGNRLILTARRSDPLLTLQRELSGKTEVHVIPLDVRDRVAVKDAVESLPERFRDI DVLINNAGLALGLEPAHKVDLDDWETMVDTNIKGLMYCTRQILPGMVARNRGHIVNLGSVAGSWPYPGGNVYGGTKAFVE QFSLNLRCDLLGTRVRVTCIQPGMAETEFSKVRFKGNEKMASQVYSGTEALTAEDIAETIYWVINRPEHVNINTLELMSI DQAWSPFAVHRRK
Sequences:
>Translated_253_residues MNEKTIFITGASAGFGAACARIFSAQGNRLILTARRSDPLLTLQRELSGKTEVHVIPLDVRDRVAVKDAVESLPERFRDI DVLINNAGLALGLEPAHKVDLDDWETMVDTNIKGLMYCTRQILPGMVARNRGHIVNLGSVAGSWPYPGGNVYGGTKAFVE QFSLNLRCDLLGTRVRVTCIQPGMAETEFSKVRFKGNEKMASQVYSGTEALTAEDIAETIYWVINRPEHVNINTLELMSI DQAWSPFAVHRRK >Mature_253_residues MNEKTIFITGASAGFGAACARIFSAQGNRLILTARRSDPLLTLQRELSGKTEVHVIPLDVRDRVAVKDAVESLPERFRDI DVLINNAGLALGLEPAHKVDLDDWETMVDTNIKGLMYCTRQILPGMVARNRGHIVNLGSVAGSWPYPGGNVYGGTKAFVE QFSLNLRCDLLGTRVRVTCIQPGMAETEFSKVRFKGNEKMASQVYSGTEALTAEDIAETIYWVINRPEHVNINTLELMSI DQAWSPFAVHRRK
Specific function: Catalyzes the NADP-dependent oxidation of L-allo- threonine and L-serine [H]
COG id: COG4221
COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=31.2, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=31.8181818181818, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI40548397, Length=192, Percent_Identity=32.2916666666667, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI214010158, Length=192, Percent_Identity=32.2916666666667, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI214010156, Length=192, Percent_Identity=32.2916666666667, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI22758144, Length=192, Percent_Identity=32.2916666666667, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI150247226, Length=197, Percent_Identity=35.0253807106599, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI7705855, Length=196, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI157739938, Length=188, Percent_Identity=28.7234042553192, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI22507405, Length=216, Percent_Identity=30.5555555555556, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI7706318, Length=175, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI32483357, Length=209, Percent_Identity=26.7942583732057, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4557649, Length=189, Percent_Identity=28.042328042328, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI19743808, Length=189, Percent_Identity=29.6296296296296, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=29.6875, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI19923817, Length=194, Percent_Identity=23.7113402061856, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI10190704, Length=185, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40254992, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI5031737, Length=206, Percent_Identity=25.2427184466019, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI119392083, Length=187, Percent_Identity=26.2032085561497, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI142976729, Length=190, Percent_Identity=26.8421052631579, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40807363, Length=198, Percent_Identity=28.2828282828283, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI50726952, Length=189, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI4504503, Length=237, Percent_Identity=24.0506329113924, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI4503817, Length=183, Percent_Identity=26.775956284153, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI1787820, Length=248, Percent_Identity=56.4516129032258, Blast_Score=295, Evalue=1e-81, Organism=Escherichia coli, GI87082100, Length=190, Percent_Identity=35.2631578947368, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=25.531914893617, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1786812, Length=188, Percent_Identity=27.1276595744681, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI2367175, Length=235, Percent_Identity=23.8297872340426, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=23.1707317073171, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI87082160, Length=191, Percent_Identity=26.1780104712042, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=29.1005291005291, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790717, Length=191, Percent_Identity=24.6073298429319, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=28.7449392712551, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17562904, Length=240, Percent_Identity=30, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=26.8292682926829, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562910, Length=198, Percent_Identity=28.2828282828283, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17559104, Length=241, Percent_Identity=26.5560165975104, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17560332, Length=245, Percent_Identity=26.530612244898, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538480, Length=198, Percent_Identity=27.7777777777778, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17544670, Length=249, Percent_Identity=29.3172690763052, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17565030, Length=246, Percent_Identity=28.0487804878049, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17560676, Length=200, Percent_Identity=26, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562906, Length=196, Percent_Identity=27.5510204081633, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538486, Length=198, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17551412, Length=250, Percent_Identity=24.4, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=29.6875, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17560150, Length=194, Percent_Identity=28.3505154639175, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17562990, Length=193, Percent_Identity=27.979274611399, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI193204405, Length=197, Percent_Identity=26.3959390862944, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17560176, Length=196, Percent_Identity=29.0816326530612, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17563726, Length=245, Percent_Identity=26.1224489795918, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560220, Length=197, Percent_Identity=26.3959390862944, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25152911, Length=198, Percent_Identity=30.3030303030303, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17531453, Length=188, Percent_Identity=26.063829787234, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI72000259, Length=247, Percent_Identity=25.5060728744939, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193203117, Length=185, Percent_Identity=28.1081081081081, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193203115, Length=185, Percent_Identity=28.1081081081081, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=257, Percent_Identity=40.0778210116732, Blast_Score=191, Evalue=8e-50, Organism=Saccharomyces cerevisiae, GI6322227, Length=198, Percent_Identity=29.7979797979798, Blast_Score=86, Evalue=8e-18, Organism=Saccharomyces cerevisiae, GI6319635, Length=199, Percent_Identity=28.1407035175879, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=187, Percent_Identity=23.5294117647059, Blast_Score=62, Evalue=8e-11, Organism=Drosophila melanogaster, GI116007236, Length=251, Percent_Identity=31.0756972111554, Blast_Score=116, Evalue=1e-26, Organism=Drosophila melanogaster, GI21358495, Length=231, Percent_Identity=29.8701298701299, Blast_Score=108, Evalue=5e-24, Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=31.9587628865979, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI24641232, Length=248, Percent_Identity=30.6451612903226, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI28571387, Length=250, Percent_Identity=30.4, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24648693, Length=247, Percent_Identity=30.3643724696356, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI21355889, Length=247, Percent_Identity=30.3643724696356, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24640442, Length=192, Percent_Identity=31.7708333333333, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI281364494, Length=254, Percent_Identity=27.5590551181102, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI24648944, Length=244, Percent_Identity=29.0983606557377, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI24641388, Length=250, Percent_Identity=30, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24663911, Length=245, Percent_Identity=27.7551020408163, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI161076933, Length=223, Percent_Identity=29.1479820627803, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI24584748, Length=223, Percent_Identity=29.1479820627803, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI21357041, Length=191, Percent_Identity=29.8429319371728, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24643142, Length=188, Percent_Identity=30.3191489361702, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI116007234, Length=255, Percent_Identity=28.6274509803922, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI116007238, Length=185, Percent_Identity=32.4324324324324, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24584744, Length=188, Percent_Identity=30.3191489361702, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=29.2553191489362, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI28574402, Length=188, Percent_Identity=30.3191489361702, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=30.2083333333333, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI24580925, Length=207, Percent_Identity=28.0193236714976, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI21357673, Length=142, Percent_Identity=29.5774647887324, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21355319, Length=228, Percent_Identity=23.2456140350877, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI17737361, Length=195, Percent_Identity=28.7179487179487, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007232, Length=189, Percent_Identity=30.1587301587302, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28033; Mature: 28033
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEKTIFITGASAGFGAACARIFSAQGNRLILTARRSDPLLTLQRELSGKTEVHVIPLDV CCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEHHCCCCCEEEEEEECC RDRVAVKDAVESLPERFRDIDVLINNAGLALGLEPAHKVDLDDWETMVDTNIKGLMYCTR CCHHHHHHHHHHHHHHHHEEEEEEECCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHH QILPGMVARNRGHIVNLGSVAGSWPYPGGNVYGGTKAFVEQFSLNLRCDLLGTRVRVTCI HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCEEEEEEE QPGMAETEFSKVRFKGNEKMASQVYSGTEALTAEDIAETIYWVINRPEHVNINTLELMSI CCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEEC DQAWSPFAVHRRK CCCCCCCEECCCC >Mature Secondary Structure MNEKTIFITGASAGFGAACARIFSAQGNRLILTARRSDPLLTLQRELSGKTEVHVIPLDV CCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEHHCCCCCEEEEEEECC RDRVAVKDAVESLPERFRDIDVLINNAGLALGLEPAHKVDLDDWETMVDTNIKGLMYCTR CCHHHHHHHHHHHHHHHHEEEEEEECCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHH QILPGMVARNRGHIVNLGSVAGSWPYPGGNVYGGTKAFVEQFSLNLRCDLLGTRVRVTCI HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCEEEEEEE QPGMAETEFSKVRFKGNEKMASQVYSGTEALTAEDIAETIYWVINRPEHVNINTLELMSI CCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEEC DQAWSPFAVHRRK CCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]