| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is trpB2 [H]
Identifier: 118579721
GI number: 118579721
Start: 1362172
End: 1363527
Strand: Reverse
Name: trpB2 [H]
Synonym: Ppro_1293
Alternate gene names: 118579721
Gene position: 1363527-1362172 (Counterclockwise)
Preceding gene: 118579722
Following gene: 118579720
Centisome position: 34.02
GC content: 63.2
Gene sequence:
>1356_bases GTGAACACAAAAATTCTACTCAACGAAGATCAGATTCCCCGCCAGTGGTACAACATCATCCCCGATATGCCAGGCCCGCT GGCGCCGGTCATCAACCCCCAGACATTGAAGCCTATCGTTCCGGAGGACATGCTGTCGATCTTCCCCATGTCCTTGATCG AACAGGAGATGTCCCCCCAGCGCTGGATCGACATCCCGGACGAGGTGCGTGACATATACAGACTCTGGCGGCCGTCACCG CTGTTCCGTGCCCACCGCCTGGAAAAGGCGCTGGGGACACCGGCCAAGATCTACTACAAGCACGAGGGGGTCTCGCCGGC CGGTTCCCACAAGCCCAACTCGGCAATCCCCCAGGCCTGGTACAACAAGCAGGCCGGCATCCGCCGCCTGGCCACGGAGA CCGGGGCCGGACAGTGGGGCACGTCACTGGCCCTGGCCTGCTCCATGTTCGGCCTGGAGTGCACCATCTACATGGTCAAG GTATCCTGCAGCCAGAAACCGTACCGCAAGAGCATGATGCAGCTGTGGGGGGCAACGGTGATCCCCTCCCCTTCCGAATT AACCAATGCCGGGCGCTCGATCCTGGCCCACGATCCGGACTGCAGCGGCAGCCTGGGCATCGCCATCTCCGAGGCGGTGG AGGATGCGGCCAACCATGCCGACACCAACTACGCCCTGGGTAGCGTGCTCAACCATGTCTGCCTGCACCAGACCGTGATC GGCCAGGAGGCCAGGGAGCAGATGAAGATTGCCGGTGACTACCCGGACGTGGTCATCGCCTGCTGCGGCGGCGGCTCCAA TTTTGCCGGCCTGGCCTTCCCCTTCATCGCCGACCGGGCCAGTGGCAAGCAGGTGCGCTGTCTTGCGGTTGAGCCGGCGT CCTGCCCGACCCTCACCAAGGGGGTCTATGCCTTTGACTACGGCGACACCGCCAGGATGGCGCCCATCGCCATGATGTAT ACTCTGGGCCATGACTTCGTCCCCCCCGGCATTCATGCCGGCGGTCTGCGTTACCACGGTCAGTCCCCTCTGATCTCCCA GCTCTACCACGCCGGCCAGATCGAGGCCAAGTCTTACAAGCAGAATGCCTGCTTCGAGGGGGCACTGCTCTTCTCCCGCT GCGAGGGGATCGTGCCTGCGCCCGAGTCGTCCCATGCGGTGCGCGCTGCCATCGACGAGGCGGTGCTGGCCAAGGAAGAG GGCAAGGAGCGCACCATCCTGTTCGGCCTGTCCGGGCACGGCCAGCTGGACATGGGCGCCTACGACGCCTACCTCTCCGG CGACCTGGAAGATTACGAGTATTCAAGCGAGCTGGTGAAACAGTCACTGGAGCGTCTGCCCAAAGTACAGCTGTAA
Upstream 100 bases:
>100_bases TGGAGGAGATCGACCGACTCGACTTCGTCTGCGAAAAGACCAGTTTTATCAGGATCGAGGACAATCTGGAATAATATGAA ATAATCCTGGAGCGACTTAA
Downstream 100 bases:
>100_bases CCGGAACCGGGGATCCGTCTCTTTTTTACGGGTCCCCGGTCTCGCCTCACCGGTCCTATCATACATGATCAAAGTAAAAA TCTGCGGTATAACCAACCTG
Product: tryptophan synthase subunit beta
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues MNTKILLNEDQIPRQWYNIIPDMPGPLAPVINPQTLKPIVPEDMLSIFPMSLIEQEMSPQRWIDIPDEVRDIYRLWRPSP LFRAHRLEKALGTPAKIYYKHEGVSPAGSHKPNSAIPQAWYNKQAGIRRLATETGAGQWGTSLALACSMFGLECTIYMVK VSCSQKPYRKSMMQLWGATVIPSPSELTNAGRSILAHDPDCSGSLGIAISEAVEDAANHADTNYALGSVLNHVCLHQTVI GQEAREQMKIAGDYPDVVIACCGGGSNFAGLAFPFIADRASGKQVRCLAVEPASCPTLTKGVYAFDYGDTARMAPIAMMY TLGHDFVPPGIHAGGLRYHGQSPLISQLYHAGQIEAKSYKQNACFEGALLFSRCEGIVPAPESSHAVRAAIDEAVLAKEE GKERTILFGLSGHGQLDMGAYDAYLSGDLEDYEYSSELVKQSLERLPKVQL
Sequences:
>Translated_451_residues MNTKILLNEDQIPRQWYNIIPDMPGPLAPVINPQTLKPIVPEDMLSIFPMSLIEQEMSPQRWIDIPDEVRDIYRLWRPSP LFRAHRLEKALGTPAKIYYKHEGVSPAGSHKPNSAIPQAWYNKQAGIRRLATETGAGQWGTSLALACSMFGLECTIYMVK VSCSQKPYRKSMMQLWGATVIPSPSELTNAGRSILAHDPDCSGSLGIAISEAVEDAANHADTNYALGSVLNHVCLHQTVI GQEAREQMKIAGDYPDVVIACCGGGSNFAGLAFPFIADRASGKQVRCLAVEPASCPTLTKGVYAFDYGDTARMAPIAMMY TLGHDFVPPGIHAGGLRYHGQSPLISQLYHAGQIEAKSYKQNACFEGALLFSRCEGIVPAPESSHAVRAAIDEAVLAKEE GKERTILFGLSGHGQLDMGAYDAYLSGDLEDYEYSSELVKQSLERLPKVQL >Mature_451_residues MNTKILLNEDQIPRQWYNIIPDMPGPLAPVINPQTLKPIVPEDMLSIFPMSLIEQEMSPQRWIDIPDEVRDIYRLWRPSP LFRAHRLEKALGTPAKIYYKHEGVSPAGSHKPNSAIPQAWYNKQAGIRRLATETGAGQWGTSLALACSMFGLECTIYMVK VSCSQKPYRKSMMQLWGATVIPSPSELTNAGRSILAHDPDCSGSLGIAISEAVEDAANHADTNYALGSVLNHVCLHQTVI GQEAREQMKIAGDYPDVVIACCGGGSNFAGLAFPFIADRASGKQVRCLAVEPASCPTLTKGVYAFDYGDTARMAPIAMMY TLGHDFVPPGIHAGGLRYHGQSPLISQLYHAGQIEAKSYKQNACFEGALLFSRCEGIVPAPESSHAVRAAIDEAVLAKEE GKERTILFGLSGHGQLDMGAYDAYLSGDLEDYEYSSELVKQSLERLPKVQL
Specific function: The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine [H]
COG id: COG1350
COG function: function code R; Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trpB family [H]
Homologues:
Organism=Escherichia coli, GI1787515, Length=412, Percent_Identity=27.6699029126214, Blast_Score=119, Evalue=4e-28, Organism=Saccharomyces cerevisiae, GI6321412, Length=384, Percent_Identity=31.7708333333333, Blast_Score=135, Evalue=2e-32,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001926 - InterPro: IPR006316 - InterPro: IPR006653 - InterPro: IPR023026 [H]
Pfam domain/function: PF00291 PALP [H]
EC number: =4.2.1.20 [H]
Molecular weight: Translated: 49284; Mature: 49284
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: PS00168 TRP_SYNTHASE_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTKILLNEDQIPRQWYNIIPDMPGPLAPVINPQTLKPIVPEDMLSIFPMSLIEQEMSPQ CCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC RWIDIPDEVRDIYRLWRPSPLFRAHRLEKALGTPAKIYYKHEGVSPAGSHKPNSAIPQAW CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHH YNKQAGIRRLATETGAGQWGTSLALACSMFGLECTIYMVKVSCSQKPYRKSMMQLWGATV HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCHHHHHHHHHHCCCC IPSPSELTNAGRSILAHDPDCSGSLGIAISEAVEDAANHADTNYALGSVLNHVCLHQTVI CCCCHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH GQEAREQMKIAGDYPDVVIACCGGGSNFAGLAFPFIADRASGKQVRCLAVEPASCPTLTK HHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCHHC GVYAFDYGDTARMAPIAMMYTLGHDFVPPGIHAGGLRYHGQSPLISQLYHAGQIEAKSYK CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCCHHHHH QNACFEGALLFSRCEGIVPAPESSHAVRAAIDEAVLAKEEGKERTILFGLSGHGQLDMGA CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCH YDAYLSGDLEDYEYSSELVKQSLERLPKVQL HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNTKILLNEDQIPRQWYNIIPDMPGPLAPVINPQTLKPIVPEDMLSIFPMSLIEQEMSPQ CCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC RWIDIPDEVRDIYRLWRPSPLFRAHRLEKALGTPAKIYYKHEGVSPAGSHKPNSAIPQAW CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHH YNKQAGIRRLATETGAGQWGTSLALACSMFGLECTIYMVKVSCSQKPYRKSMMQLWGATV HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCHHHHHHHHHHCCCC IPSPSELTNAGRSILAHDPDCSGSLGIAISEAVEDAANHADTNYALGSVLNHVCLHQTVI CCCCHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH GQEAREQMKIAGDYPDVVIACCGGGSNFAGLAFPFIADRASGKQVRCLAVEPASCPTLTK HHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCHHC GVYAFDYGDTARMAPIAMMYTLGHDFVPPGIHAGGLRYHGQSPLISQLYHAGQIEAKSYK CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCCHHHHH QNACFEGALLFSRCEGIVPAPESSHAVRAAIDEAVLAKEEGKERTILFGLSGHGQLDMGA CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCH YDAYLSGDLEDYEYSSELVKQSLERLPKVQL HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]