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The map label for this gene is cydA [H]

Identifier: 118579598

GI number: 118579598

Start: 1217853

End: 1219199

Strand: Reverse

Name: cydA [H]

Synonym: Ppro_1167

Alternate gene names: 118579598

Gene position: 1219199-1217853 (Counterclockwise)

Preceding gene: 118579599

Following gene: 118579597

Centisome position: 30.42

GC content: 60.73

Gene sequence:

>1347_bases
ATGGACACATTACTGCTCAGTCGACTACAATTCGCCGTAACCTGCATGTTCCATTTCATTTTCGTACCGCTGACCCTGGG
ACTCTCCATCATGGTGGCCTGGATGGAGACCCGCTACTGCATGACCGGTGACGAAACCTGGCTGCGCATGACCAGGTTCT
GGGGCAAGCTGTTTCTGATCAACTTCGCCCTGGGAGTGGTAACCGGCATAACCATGGAGTTCCAGTTCGGCATGAACTGG
GCCGAGTACTCCCGCTACGTGGGCGACATCTTCGGCGCCCCCCTGGCCATCGAGGCCACCGTGGCCTTCTTCCTGGAGTC
GGTCTTCATCGGCCTCTGGATCTTCGGCTGGGACAAGGTTTCCCAAAAGGTGCACCTGCTCTCCATCTGGCTGGTGGCAA
TCGCAACCAACCTCTCCGGCCTGGTGATCCTGCTGGCCAATGCCTGGATGCAGAACCCGGTGGGCTACGTGCTGCGCAAC
AACCGGGCGGAAATGACCGACTTCATCGCCGTGCTCACCAACCCCTATGGCCTGATCAAATTCGGGCACCAGATTACCGC
CGCCTACACCCTGGCGGCCTTCTTCGTCATGGGCATTTCGGCCTGGCACCTGCTGCGCAACAACGAACTGGACTTTTTCA
AGCGCTCTTTCCGTCAGGCTGCGCTGTTCGGCCTGGCGGGATGCCTGCTGGCCGCCATGGTGGGCGACCTCTCTTCGGTG
GAGGTGGCCAAGGTCCAGCCGGCCAAGTTCGCCGCCATGGAGTCGGTCTGGGAGACGAAAAAAGGGGCTGACCTGAACCT
GCTGCAGGTTCCGGACGAAAAGAACGAGCGCAACTCACTGGAGGCGTTTTCCATCCCCAACATGATCAGCCTGCTGGCAT
TCCGCGACGCCAACGCCGAAGTCACCGGCCTGAAGAGCTTCCCGCGCGAACTGCGGCCGCCGGTGCTGCCGGTGTTCCTC
AGTTTCCGCGTCATGGTCGGCCTGGGGGTCTACTTCATCCTGGCCAGCCTGATCGCGGTGATCATCTCCTTCAAGGGGCA
TCCCGAACGTCACCGTCTGTTCCTGACCCTGCTGGTGTTCTCGCTGCCGCTCCCCTATATCGCCAACCAGCTGGGCTGGC
TGGTTGCTGAAATGGGGCGTCAGCCCTGGATCGTCTACGGTGTCCTGAAAACCGCCGACGCCGTATCCACGAGTGTCTCC
GCCACCCAGGTGGCCATTTCCCTGGCGGGCTTCACCCTCCTCTACGGTGGATTGGGGGTTATCGACATCTATCTGCTGGC
AAAATACGCCCGCAAGGGTCCCGACAGCGACGGTTCCGGCATCATCAATCTGGCAGGGAGGGCATAG

Upstream 100 bases:

>100_bases
TTAACCAGCTAGCAACAAAAAACGGGCAATCCGGTACCAGACTGCTACAATCAATCCCAGCATAGGTTGTTGTGTCATTT
ATTATCGCAGAGGAGGAAGC

Downstream 100 bases:

>100_bases
ACCATGGAAGCACATGCATTTCAGATCATCTGGTTTGTTCTCTGGGGCGTGCTCTGGAGCTTCTACTTCATGACCGACGG
ATTTGTCCTGGGAACCGGGT

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MDTLLLSRLQFAVTCMFHFIFVPLTLGLSIMVAWMETRYCMTGDETWLRMTRFWGKLFLINFALGVVTGITMEFQFGMNW
AEYSRYVGDIFGAPLAIEATVAFFLESVFIGLWIFGWDKVSQKVHLLSIWLVAIATNLSGLVILLANAWMQNPVGYVLRN
NRAEMTDFIAVLTNPYGLIKFGHQITAAYTLAAFFVMGISAWHLLRNNELDFFKRSFRQAALFGLAGCLLAAMVGDLSSV
EVAKVQPAKFAAMESVWETKKGADLNLLQVPDEKNERNSLEAFSIPNMISLLAFRDANAEVTGLKSFPRELRPPVLPVFL
SFRVMVGLGVYFILASLIAVIISFKGHPERHRLFLTLLVFSLPLPYIANQLGWLVAEMGRQPWIVYGVLKTADAVSTSVS
ATQVAISLAGFTLLYGGLGVIDIYLLAKYARKGPDSDGSGIINLAGRA

Sequences:

>Translated_448_residues
MDTLLLSRLQFAVTCMFHFIFVPLTLGLSIMVAWMETRYCMTGDETWLRMTRFWGKLFLINFALGVVTGITMEFQFGMNW
AEYSRYVGDIFGAPLAIEATVAFFLESVFIGLWIFGWDKVSQKVHLLSIWLVAIATNLSGLVILLANAWMQNPVGYVLRN
NRAEMTDFIAVLTNPYGLIKFGHQITAAYTLAAFFVMGISAWHLLRNNELDFFKRSFRQAALFGLAGCLLAAMVGDLSSV
EVAKVQPAKFAAMESVWETKKGADLNLLQVPDEKNERNSLEAFSIPNMISLLAFRDANAEVTGLKSFPRELRPPVLPVFL
SFRVMVGLGVYFILASLIAVIISFKGHPERHRLFLTLLVFSLPLPYIANQLGWLVAEMGRQPWIVYGVLKTADAVSTSVS
ATQVAISLAGFTLLYGGLGVIDIYLLAKYARKGPDSDGSGIINLAGRA
>Mature_448_residues
MDTLLLSRLQFAVTCMFHFIFVPLTLGLSIMVAWMETRYCMTGDETWLRMTRFWGKLFLINFALGVVTGITMEFQFGMNW
AEYSRYVGDIFGAPLAIEATVAFFLESVFIGLWIFGWDKVSQKVHLLSIWLVAIATNLSGLVILLANAWMQNPVGYVLRN
NRAEMTDFIAVLTNPYGLIKFGHQITAAYTLAAFFVMGISAWHLLRNNELDFFKRSFRQAALFGLAGCLLAAMVGDLSSV
EVAKVQPAKFAAMESVWETKKGADLNLLQVPDEKNERNSLEAFSIPNMISLLAFRDANAEVTGLKSFPRELRPPVLPVFL
SFRVMVGLGVYFILASLIAVIISFKGHPERHRLFLTLLVFSLPLPYIANQLGWLVAEMGRQPWIVYGVLKTADAVSTSVS
ATQVAISLAGFTLLYGGLGVIDIYLLAKYARKGPDSDGSGIINLAGRA

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=511, Percent_Identity=39.5303326810176, Blast_Score=349, Evalue=2e-97,
Organism=Escherichia coli, GI1787212, Length=503, Percent_Identity=41.7495029821074, Blast_Score=345, Evalue=3e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49734; Mature: 49734

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLLLSRLQFAVTCMFHFIFVPLTLGLSIMVAWMETRYCMTGDETWLRMTRFWGKLFLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHH
NFALGVVTGITMEFQFGMNWAEYSRYVGDIFGAPLAIEATVAFFLESVFIGLWIFGWDKV
HHHHHHHHHCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHH
SQKVHLLSIWLVAIATNLSGLVILLANAWMQNPVGYVLRNNRAEMTDFIAVLTNPYGLIK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHEEECCCHHHHHHHHHHHCCHHHHH
FGHQITAAYTLAAFFVMGISAWHLLRNNELDFFKRSFRQAALFGLAGCLLAAMVGDLSSV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EVAKVQPAKFAAMESVWETKKGADLNLLQVPDEKNERNSLEAFSIPNMISLLAFRDANAE
EEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCHHHHHHHHCCCCCC
VTGLKSFPRELRPPVLPVFLSFRVMVGLGVYFILASLIAVIISFKGHPERHRLFLTLLVF
EECHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
SLPLPYIANQLGWLVAEMGRQPWIVYGVLKTADAVSTSVSATQVAISLAGFTLLYGGLGV
HCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHH
IDIYLLAKYARKGPDSDGSGIINLAGRA
HHHHHHHHHHHCCCCCCCCCEEEECCCC
>Mature Secondary Structure
MDTLLLSRLQFAVTCMFHFIFVPLTLGLSIMVAWMETRYCMTGDETWLRMTRFWGKLFLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHH
NFALGVVTGITMEFQFGMNWAEYSRYVGDIFGAPLAIEATVAFFLESVFIGLWIFGWDKV
HHHHHHHHHCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHH
SQKVHLLSIWLVAIATNLSGLVILLANAWMQNPVGYVLRNNRAEMTDFIAVLTNPYGLIK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHEEECCCHHHHHHHHHHHCCHHHHH
FGHQITAAYTLAAFFVMGISAWHLLRNNELDFFKRSFRQAALFGLAGCLLAAMVGDLSSV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EVAKVQPAKFAAMESVWETKKGADLNLLQVPDEKNERNSLEAFSIPNMISLLAFRDANAE
EEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCHHHHHHHHCCCCCC
VTGLKSFPRELRPPVLPVFLSFRVMVGLGVYFILASLIAVIISFKGHPERHRLFLTLLVF
EECHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
SLPLPYIANQLGWLVAEMGRQPWIVYGVLKTADAVSTSVSATQVAISLAGFTLLYGGLGV
HCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHH
IDIYLLAKYARKGPDSDGSGIINLAGRA
HHHHHHHHHHHCCCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]