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The map label for this gene is cydB [H]

Identifier: 118579597

GI number: 118579597

Start: 1216794

End: 1217849

Strand: Reverse

Name: cydB [H]

Synonym: Ppro_1166

Alternate gene names: 118579597

Gene position: 1217849-1216794 (Counterclockwise)

Preceding gene: 118579598

Following gene: 118579596

Centisome position: 30.39

GC content: 59.85

Gene sequence:

>1056_bases
ATGGAAGCACATGCATTTCAGATCATCTGGTTTGTTCTCTGGGGCGTGCTCTGGAGCTTCTACTTCATGACCGACGGATT
TGTCCTGGGAACCGGGTTCATGTCCGGCTTCCTGGCAAAGAGCGATACGGAACGGAGAGTGCTGATCAATACGGTTGGCC
CGATATGGGACGGTAACGAGGTCTGGCTGGTCACCGCCGGCGGCGCGACCTTCGCCGCCTTTCCCACCACCTATGCCCTG
ATGTTCAGCAATCTCTACACGGCGCTGCTGCTGTTGCTCTTCGCCCTGATCGTGCGGGGGGTTGCCTTCGAATTCCGCGG
CAAGATCGACAGTCCCTCCTGGAAGAAGGGCTGGGACAGAGCAATCACCATCGCCAGTTTCCTGCCCAGCCTGCTCTTCG
GCGTAGCCTTCGGCAACATCTTCAAGGGCATCCCCATGCGCAACGACTTCAGCGCCAGCATTTTTGCCTACGACGGCTCC
CTGCTGACCCTGCTCAACCCCTACGGCCTGCTGACCGGCATCCTGTTCGTCATGCTCTTCGCGGTCCACGGTTCCCTGTA
CGCAGCCATCAAGACCACCGGAGATCTTTCCCAACGGGCGGCCGCCATGGCCAACCGGCTCTGGTTTCCGCTGCTGGCAG
TGGCGGTGCTCTTCCTGGGCGCAACCTATCCGGCCACACGGCTGTACGACAACTACCTGAAGAGCCCGCTGCTGCTGATC
ATCCCGCTCATCGCCGTCTCATCCCTGCTTCTGGTCAAACTCTACGCCTCCCGTGACAGGCTGCACATGGCCTTTCTCTT
CTCCTGCCTGACCATCGTCTTCGTCTGCTACACCGGAGTTGCCGGACTTTTCCCCAACCTGATCCCCTCCAGTATCGACC
CGGCCTCCAACCTGACCATCTACAACTCCTCCTCCAGCCTGCTGACCCTGAAGATCATGACCGGCGTTGCGCTGATCTTC
GTCCCGATCGTGATCGCCTACAAGGCCTGGGTCTACCGCATATTCCGGGCACGGGTCACCAGCGAGGATGTCCTGGAGAG
TTCCGAGGCCTATTGA

Upstream 100 bases:

>100_bases
ATTGGGGGTTATCGACATCTATCTGCTGGCAAAATACGCCCGCAAGGGTCCCGACAGCGACGGTTCCGGCATCATCAATC
TGGCAGGGAGGGCATAGACC

Downstream 100 bases:

>100_bases
GCCCCATCCGGCCCAAGCGAAACGGGCGGTTTTACAGCCGAAAAACCGCCCCGATTTGACATCCATTCCCGGATGCTGTA
TAAGGCTACAACTCAAACCC

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MEAHAFQIIWFVLWGVLWSFYFMTDGFVLGTGFMSGFLAKSDTERRVLINTVGPIWDGNEVWLVTAGGATFAAFPTTYAL
MFSNLYTALLLLLFALIVRGVAFEFRGKIDSPSWKKGWDRAITIASFLPSLLFGVAFGNIFKGIPMRNDFSASIFAYDGS
LLTLLNPYGLLTGILFVMLFAVHGSLYAAIKTTGDLSQRAAAMANRLWFPLLAVAVLFLGATYPATRLYDNYLKSPLLLI
IPLIAVSSLLLVKLYASRDRLHMAFLFSCLTIVFVCYTGVAGLFPNLIPSSIDPASNLTIYNSSSSLLTLKIMTGVALIF
VPIVIAYKAWVYRIFRARVTSEDVLESSEAY

Sequences:

>Translated_351_residues
MEAHAFQIIWFVLWGVLWSFYFMTDGFVLGTGFMSGFLAKSDTERRVLINTVGPIWDGNEVWLVTAGGATFAAFPTTYAL
MFSNLYTALLLLLFALIVRGVAFEFRGKIDSPSWKKGWDRAITIASFLPSLLFGVAFGNIFKGIPMRNDFSASIFAYDGS
LLTLLNPYGLLTGILFVMLFAVHGSLYAAIKTTGDLSQRAAAMANRLWFPLLAVAVLFLGATYPATRLYDNYLKSPLLLI
IPLIAVSSLLLVKLYASRDRLHMAFLFSCLTIVFVCYTGVAGLFPNLIPSSIDPASNLTIYNSSSSLLTLKIMTGVALIF
VPIVIAYKAWVYRIFRARVTSEDVLESSEAY
>Mature_351_residues
MEAHAFQIIWFVLWGVLWSFYFMTDGFVLGTGFMSGFLAKSDTERRVLINTVGPIWDGNEVWLVTAGGATFAAFPTTYAL
MFSNLYTALLLLLFALIVRGVAFEFRGKIDSPSWKKGWDRAITIASFLPSLLFGVAFGNIFKGIPMRNDFSASIFAYDGS
LLTLLNPYGLLTGILFVMLFAVHGSLYAAIKTTGDLSQRAAAMANRLWFPLLAVAVLFLGATYPATRLYDNYLKSPLLLI
IPLIAVSSLLLVKLYASRDRLHMAFLFSCLTIVFVCYTGVAGLFPNLIPSSIDPASNLTIYNSSSSLLTLKIMTGVALIF
VPIVIAYKAWVYRIFRARVTSEDVLESSEAY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=377, Percent_Identity=37.6657824933687, Blast_Score=254, Evalue=8e-69,
Organism=Escherichia coli, GI1787213, Length=375, Percent_Identity=35.4666666666667, Blast_Score=225, Evalue=3e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38799; Mature: 38799

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAHAFQIIWFVLWGVLWSFYFMTDGFVLGTGFMSGFLAKSDTERRVLINTVGPIWDGNE
CCCHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCEEEEECCCCCCCCCE
VWLVTAGGATFAAFPTTYALMFSNLYTALLLLLFALIVRGVAFEFRGKIDSPSWKKGWDR
EEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
AITIASFLPSLLFGVAFGNIFKGIPMRNDFSASIFAYDGSLLTLLNPYGLLTGILFVMLF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHCHHHHHHHHHHHHHH
AVHGSLYAAIKTTGDLSQRAAAMANRLWFPLLAVAVLFLGATYPATRLYDNYLKSPLLLI
HHHHHHHEEHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
IPLIAVSSLLLVKLYASRDRLHMAFLFSCLTIVFVCYTGVAGLFPNLIPSSIDPASNLTI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
YNSSSSLLTLKIMTGVALIFVPIVIAYKAWVYRIFRARVTSEDVLESSEAY
EECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC
>Mature Secondary Structure
MEAHAFQIIWFVLWGVLWSFYFMTDGFVLGTGFMSGFLAKSDTERRVLINTVGPIWDGNE
CCCHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCEEEEECCCCCCCCCE
VWLVTAGGATFAAFPTTYALMFSNLYTALLLLLFALIVRGVAFEFRGKIDSPSWKKGWDR
EEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
AITIASFLPSLLFGVAFGNIFKGIPMRNDFSASIFAYDGSLLTLLNPYGLLTGILFVMLF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHCHHHHHHHHHHHHHH
AVHGSLYAAIKTTGDLSQRAAAMANRLWFPLLAVAVLFLGATYPATRLYDNYLKSPLLLI
HHHHHHHEEHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
IPLIAVSSLLLVKLYASRDRLHMAFLFSCLTIVFVCYTGVAGLFPNLIPSSIDPASNLTI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
YNSSSSLLTLKIMTGVALIFVPIVIAYKAWVYRIFRARVTSEDVLESSEAY
EECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]