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The map label for this gene is rimM

Identifier: 118579529

GI number: 118579529

Start: 1144313

End: 1144771

Strand: Reverse

Name: rimM

Synonym: Ppro_1096

Alternate gene names: 118579529

Gene position: 1144771-1144313 (Counterclockwise)

Preceding gene: 118579530

Following gene: 118579528

Centisome position: 28.56

GC content: 59.04

Gene sequence:

>459_bases
ATGCTGAAGTTACACTCCTATTCGGGCAGCGTGGAGAGCCTGTGCACCTGTGACAGCGTCATCCTCAGATCCCGTGACGG
AGCGCTGAACCGGTTCGAGCCAAAACCTGTCCTTCCCCGCCCGGGAAAGTTCCTGATCGGCTTCAAGGGAGTGGACCATA
TTGACCAGGCCCAGACGCTGGTGGGAAGTGAGATCTGCCTGCGGCGGGACCAGCTGCCCGAACCGGAAGAAGACGAGTAT
TACTGGTGTGACCTGATAGGACTCGAGGTCGCGACAGTGGAAGGCATGGCGCTGGGCGTTCTCGAGGAGATATTCAAAGC
CGGCAGCAGCGACATCTATGTAGTCAGGGGCGCTGGGCGCGAATACTTGATCCCGGCCATAGCCGATGTGATCCACAGTG
TCGATCTGGAGATGGGCCGGATGCTGATCACCCCGCTGGAAGGCCTGCTGGATCTATGA

Upstream 100 bases:

>100_bases
GGATAACAAGAAGGCTATCCTCAAGATCGTTGAATAGATGATTGATTCCGAATCCTTGATTCCCGTGGGCAAGCTCGTCG
CTACCCACGGGATCAGGGGA

Downstream 100 bases:

>100_bases
TTTTCGACATACTGACCCTCTTTCCCGGCATGTTCCGCGGCCCCTTCGACGAGAGCATCATCAGGCGGGCCAGGGAAAAA
CAGCTCATTGACATCAGCCT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MLKLHSYSGSVESLCTCDSVILRSRDGALNRFEPKPVLPRPGKFLIGFKGVDHIDQAQTLVGSEICLRRDQLPEPEEDEY
YWCDLIGLEVATVEGMALGVLEEIFKAGSSDIYVVRGAGREYLIPAIADVIHSVDLEMGRMLITPLEGLLDL

Sequences:

>Translated_152_residues
MLKLHSYSGSVESLCTCDSVILRSRDGALNRFEPKPVLPRPGKFLIGFKGVDHIDQAQTLVGSEICLRRDQLPEPEEDEY
YWCDLIGLEVATVEGMALGVLEEIFKAGSSDIYVVRGAGREYLIPAIADVIHSVDLEMGRMLITPLEGLLDL
>Mature_152_residues
MLKLHSYSGSVESLCTCDSVILRSRDGALNRFEPKPVLPRPGKFLIGFKGVDHIDQAQTLVGSEICLRRDQLPEPEEDEY
YWCDLIGLEVATVEGMALGVLEEIFKAGSSDIYVVRGAGREYLIPAIADVIHSVDLEMGRMLITPLEGLLDL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=100, Percent_Identity=39, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PELPD (A1AN01)

Other databases:

- EMBL:   CP000482
- RefSeq:   YP_900779.1
- STRING:   A1AN01
- GeneID:   4573738
- GenomeReviews:   CP000482_GR
- KEGG:   ppd:Ppro_1096
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 16807; Mature: 16807

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLHSYSGSVESLCTCDSVILRSRDGALNRFEPKPVLPRPGKFLIGFKGVDHIDQAQTL
CEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHH
VGSEICLRRDQLPEPEEDEYYWCDLIGLEVATVEGMALGVLEEIFKAGSSDIYVVRGAGR
HHHHHHHHHCCCCCCCCCCEEEEEEECCEEEHHCCHHHHHHHHHHHCCCCCEEEEECCCC
EYLIPAIADVIHSVDLEMGRMLITPLEGLLDL
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLKLHSYSGSVESLCTCDSVILRSRDGALNRFEPKPVLPRPGKFLIGFKGVDHIDQAQTL
CEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHH
VGSEICLRRDQLPEPEEDEYYWCDLIGLEVATVEGMALGVLEEIFKAGSSDIYVVRGAGR
HHHHHHHHHCCCCCCCCCCEEEEEEECCEEEHHCCHHHHHHHHHHHCCCCCEEEEECCCC
EYLIPAIADVIHSVDLEMGRMLITPLEGLLDL
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA