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The map label for this gene is ylmD [H]

Identifier: 118578723

GI number: 118578723

Start: 278079

End: 278876

Strand: Reverse

Name: ylmD [H]

Synonym: Ppro_0281

Alternate gene names: 118578723

Gene position: 278876-278079 (Counterclockwise)

Preceding gene: 118578724

Following gene: 118578722

Centisome position: 6.96

GC content: 64.91

Gene sequence:

>798_bases
ATGCAGATCAAACGCGCCGACCGCATCCACTACCTGGCCACCGATTTCAATGGCCAGCCCTGCTCCGTACAGGGTTTCAC
CACCCGCCACGAGGGTGTGTCGCGCCCCCCCTACAACTCACTCAACCTGGGAACCACCACCCTGGACCAGCAGCACAACG
TGGAGGGGAACCGCAGCCTGATGATGCGCGCCTTCGGCGTTGCCCAGGATGCGCTGGTCACGGTTCGCCAGGTTCATGGC
AACGATATTCTGGTGATCGACGCGCCCAACGAGGATGCCACCCATTTCCTGTCGGTGGAAAGCGACGCCATCGTAACCAA
TCAGCCGGGGCTGATGATCGGGGTCTGCGTGGCCGACTGCGTCCCGATCCTGCTGCTGGACGCGGAAAAGCGGGTGGCTG
CGGCAGTGCATGCCGGCTGGCAGGGCACCGCCTCCCGGCTGGTCGCCAAGACGGTTGCCGCCATGGCTTCGCTGTTCGCC
TGCGACCCGGCAACGCTGCAGGCGGCCATCGGCCCCTGCATCTCTCCCTGCTGCTACGAGGTTGACGAGCCGGTCAGGCA
GGCCTTCACCAACAGCGGCATTCCCTGGGATTCCGTCGCAACCGGAAGCGGAACTGACAAATGGAGGCTGGACCTGGCAG
GTGCCAACCGGCACCTGCTCCTCTCCGCCGGCCTCCCCTCCCCCGCCATCCAGACCGCGGAGATGTGCGTCTGCTGCCAG
CGCGAACAGTTCTTCTCCTACCGCCGGGACAAGGGGGAGACCGGCCGACAGATGGGGTTCATCATGCTGAAACCATAG

Upstream 100 bases:

>100_bases
GCGTCTATATCTGGCGGCAGCGGCGGCGCTCGGGTATTAAAGCCTAAAGAACCGGGGAAGGCAAAGAGATTTTTAGCCAT
TTCCAGAGGAGACACAAACC

Downstream 100 bases:

>100_bases
AGTTTGATGGGCTCTATGACTTCGATGGGGTGACTCCGCTAACTCATTGAACTTATAGACCCCATACACCTCAAGAGGTT
AGCCATGCTTGCCAAAGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MQIKRADRIHYLATDFNGQPCSVQGFTTRHEGVSRPPYNSLNLGTTTLDQQHNVEGNRSLMMRAFGVAQDALVTVRQVHG
NDILVIDAPNEDATHFLSVESDAIVTNQPGLMIGVCVADCVPILLLDAEKRVAAAVHAGWQGTASRLVAKTVAAMASLFA
CDPATLQAAIGPCISPCCYEVDEPVRQAFTNSGIPWDSVATGSGTDKWRLDLAGANRHLLLSAGLPSPAIQTAEMCVCCQ
REQFFSYRRDKGETGRQMGFIMLKP

Sequences:

>Translated_265_residues
MQIKRADRIHYLATDFNGQPCSVQGFTTRHEGVSRPPYNSLNLGTTTLDQQHNVEGNRSLMMRAFGVAQDALVTVRQVHG
NDILVIDAPNEDATHFLSVESDAIVTNQPGLMIGVCVADCVPILLLDAEKRVAAAVHAGWQGTASRLVAKTVAAMASLFA
CDPATLQAAIGPCISPCCYEVDEPVRQAFTNSGIPWDSVATGSGTDKWRLDLAGANRHLLLSAGLPSPAIQTAEMCVCCQ
REQFFSYRRDKGETGRQMGFIMLKP
>Mature_265_residues
MQIKRADRIHYLATDFNGQPCSVQGFTTRHEGVSRPPYNSLNLGTTTLDQQHNVEGNRSLMMRAFGVAQDALVTVRQVHG
NDILVIDAPNEDATHFLSVESDAIVTNQPGLMIGVCVADCVPILLLDAEKRVAAAVHAGWQGTASRLVAKTVAAMASLFA
CDPATLQAAIGPCISPCCYEVDEPVRQAFTNSGIPWDSVATGSGTDKWRLDLAGANRHLLLSAGLPSPAIQTAEMCVCCQ
REQFFSYRRDKGETGRQMGFIMLKP

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=249, Percent_Identity=29.3172690763052, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI190194372, Length=249, Percent_Identity=29.3172690763052, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI1788945, Length=237, Percent_Identity=36.7088607594937, Blast_Score=126, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 28646; Mature: 28646

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIKRADRIHYLATDFNGQPCSVQGFTTRHEGVSRPPYNSLNLGTTTLDQQHNVEGNRSL
CCCCCCCCEEEEEECCCCCCCEEECCCHHCCCCCCCCCCCCCCCCEECCCCCCCCCCHHH
MMRAFGVAQDALVTVRQVHGNDILVIDAPNEDATHFLSVESDAIVTNQPGLMIGVCVADC
HHHHHCCHHHHHHHHHEECCCEEEEEECCCCCCEEEEEECCCEEEECCCCCEEHHHHHHH
VPILLLDAEKRVAAAVHAGWQGTASRLVAKTVAAMASLFACDPATLQAAIGPCISPCCYE
HHEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHH
VDEPVRQAFTNSGIPWDSVATGSGTDKWRLDLAGANRHLLLSAGLPSPAIQTAEMCVCCQ
CCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHC
REQFFSYRRDKGETGRQMGFIMLKP
HHHHHHHHHCCCCCCCCEEEEEECC
>Mature Secondary Structure
MQIKRADRIHYLATDFNGQPCSVQGFTTRHEGVSRPPYNSLNLGTTTLDQQHNVEGNRSL
CCCCCCCCEEEEEECCCCCCCEEECCCHHCCCCCCCCCCCCCCCCEECCCCCCCCCCHHH
MMRAFGVAQDALVTVRQVHGNDILVIDAPNEDATHFLSVESDAIVTNQPGLMIGVCVADC
HHHHHCCHHHHHHHHHEECCCEEEEEECCCCCCEEEEEECCCEEEECCCCCEEHHHHHHH
VPILLLDAEKRVAAAVHAGWQGTASRLVAKTVAAMASLFACDPATLQAAIGPCISPCCYE
HHEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHH
VDEPVRQAFTNSGIPWDSVATGSGTDKWRLDLAGANRHLLLSAGLPSPAIQTAEMCVCCQ
CCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHC
REQFFSYRRDKGETGRQMGFIMLKP
HHHHHHHHHCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]