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The map label for this gene is pecS [H]

Identifier: 117921300

GI number: 117921300

Start: 3418376

End: 3418969

Strand: Reverse

Name: pecS [H]

Synonym: Shewana3_2859

Alternate gene names: 117921300

Gene position: 3418969-3418376 (Counterclockwise)

Preceding gene: 117921302

Following gene: 117921299

Centisome position: 68.76

GC content: 51.35

Gene sequence:

>594_bases
ATGAATTCTGCGGCAAAATGGTTAGCATGTAAAGAATCTTTATGTAGAGATAAAACCATGGCAGAAAATCAATCAGCACT
CGATACTCAGCAGGCACTCGTAACGTCTGAAGACGGATTGGATATCATCCTTGGGCAGTGGCAGGCTCAAGGGGTGACAG
AGGATTTGGTTCCGATGGCGGTGTTAGGACGCATCGCGCGCCTGACCAAATATATGGAAAACGCCATCGCCCTGTGTCAC
GGCGAATTTGGCCTAGGTCAGGGGGAATTTGATGTGCTCGCGACCCTCAGACGTTCAGGCGAGCCTTATATGCTATCGCC
TTCGCAGCTGTATCAGAGCATGATGTTAAGCTCTGGCGCCATGACCAGTCGCTTAGACCGACTTGAAAATAAAGGGCTGA
TTGCCCGTGAGCACAGTAAGGAAGACCGCCGCGCCGTGCATGTGTCGCTCACCGCAGAAGGCAAGGCGTTGATTGACGCG
GCGTTGCCCAAACATATTCAATGTCAGAGCGCGTTATTGGCAGGGGTGCCTAGCGCCGAGCGCGAAATATTACAGCAGAT
TTTAAAGACTTGGCTTGCTCACTTTGAACGGTAA

Upstream 100 bases:

>100_bases
CTATGCTGGGTCGAATAAAAATGGCTAACACAATCCGTTGAACAGTTTGCACTGTGAAACTGATTTAAACTTTATGAAAA
GTATCTTTATATAAAGATAT

Downstream 100 bases:

>100_bases
TCGGCCCAGTTTTTGGGGCGAGAGACTAAGTGCCATTTGGCGTTTTTAGGGATAACATCAGGGAGTGACTATGGTAAAAA
AACGCGAAGCGTTTGAAATT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MNSAAKWLACKESLCRDKTMAENQSALDTQQALVTSEDGLDIILGQWQAQGVTEDLVPMAVLGRIARLTKYMENAIALCH
GEFGLGQGEFDVLATLRRSGEPYMLSPSQLYQSMMLSSGAMTSRLDRLENKGLIAREHSKEDRRAVHVSLTAEGKALIDA
ALPKHIQCQSALLAGVPSAEREILQQILKTWLAHFER

Sequences:

>Translated_197_residues
MNSAAKWLACKESLCRDKTMAENQSALDTQQALVTSEDGLDIILGQWQAQGVTEDLVPMAVLGRIARLTKYMENAIALCH
GEFGLGQGEFDVLATLRRSGEPYMLSPSQLYQSMMLSSGAMTSRLDRLENKGLIAREHSKEDRRAVHVSLTAEGKALIDA
ALPKHIQCQSALLAGVPSAEREILQQILKTWLAHFER
>Mature_197_residues
MNSAAKWLACKESLCRDKTMAENQSALDTQQALVTSEDGLDIILGQWQAQGVTEDLVPMAVLGRIARLTKYMENAIALCH
GEFGLGQGEFDVLATLRRSGEPYMLSPSQLYQSMMLSSGAMTSRLDRLENKGLIAREHSKEDRRAVHVSLTAEGKALIDA
ALPKHIQCQSALLAGVPSAEREILQQILKTWLAHFER

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 21723; Mature: 21723

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSAAKWLACKESLCRDKTMAENQSALDTQQALVTSEDGLDIILGQWQAQGVTEDLVPMA
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHH
VLGRIARLTKYMENAIALCHGEFGLGQGEFDVLATLRRSGEPYMLSPSQLYQSMMLSSGA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCH
MTSRLDRLENKGLIAREHSKEDRRAVHVSLTAEGKALIDAALPKHIQCQSALLAGVPSAE
HHHHHHHHHCCCCEECCCCCCCCEEEEEEEECCCHHHHHHHCCCHHHHHHHHHHCCCHHH
REILQQILKTWLAHFER
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNSAAKWLACKESLCRDKTMAENQSALDTQQALVTSEDGLDIILGQWQAQGVTEDLVPMA
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHH
VLGRIARLTKYMENAIALCHGEFGLGQGEFDVLATLRRSGEPYMLSPSQLYQSMMLSSGA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCH
MTSRLDRLENKGLIAREHSKEDRRAVHVSLTAEGKALIDAALPKHIQCQSALLAGVPSAE
HHHHHHHHHCCCCEECCCCCCCCEEEEEEEECCCHHHHHHHCCCHHHHHHHHHHCCCHHH
REILQQILKTWLAHFER
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]