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The map label for this gene is miaE [H]

Identifier: 117921108

GI number: 117921108

Start: 3183647

End: 3184417

Strand: Reverse

Name: miaE [H]

Synonym: Shewana3_2667

Alternate gene names: 117921108

Gene position: 3184417-3183647 (Counterclockwise)

Preceding gene: 117921110

Following gene: 117921105

Centisome position: 64.04

GC content: 47.73

Gene sequence:

>771_bases
ATGCAGCAATTATTGGCACCTGTTCATGCGTTTCTTCGTTGTGAGACGCCGCAAACTTGGATTGATATGGCACGAGCCTC
TGCCTCGTTAGATGAACTCTTAATCGACCACTGTAATTGTGAGCTAAAAGCGGCGCAGACTGCGATGTTCTTGTTGAGGC
GATACGCCTTGGATAAAGACAGCGGGCAATCGCTATTGGCGTGGGCAAAACCCTATGAGGAATTTGTTTATCACAAGGAT
CGCGATATCGAGCTATTTTTAGCTCGCGATGTCAAAAAGAACGAGCTGGTTGCCAATCTACAGCCGAATCAACATTTTGC
TTTTGCTCAGGATCTTATTCCGCCACTGATCCGTTTAATAAAAGAAGAATTCCATCATTTTGAGCAAGTGCTGGAGCTGA
TGCATGCACGGCACATTCCGTATCGCAATATTCGTGCAGGGCGTTACGCAAAGGGCATGATGAGCCACGTGACCACCCAT
GAGAAGGATATTCTGCGGGATAAGTTGATTGTGGGAGCGTACATTGAGGCGCGCTCCTGTGAGCGCTTTGCCAAATTAGC
GCCTTACTTGGATACAGAGTTAAGTAAGTTTTATGTGTCCTTGCTGCGCTCTGAGGCACGTCATTTTGAGGATTATCTTA
AGCTGGCGCAGCTCGTTTCAACGGAGGATATTACCGAGCGGGTGGCTTATTTTGGCGAGAGGGAAGCCGAATTAATTATG
GCGCCCGATGACGAGTTTCATTTCCACAGTGGTCAACCCTTAGTTGCCTAG

Upstream 100 bases:

>100_bases
AAAGTTCATCTCGTCAAGTTTACTGCGGTGTAAAGCTATAGCTTGTCGATAATTACGCGTAAAATATGACGATATTTTTT
TAATGATTTTGAGTGATCCC

Downstream 100 bases:

>100_bases
TTGAAATAACCCTCAGTTGCCTAGTGGCAATACAAATAGCGGCCTCACCATATTCAGGTATGAGGCCTAAGCGGTTCAAT
GTGTTAATGGTGAGGGCGCT

Product: tRNA hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MQQLLAPVHAFLRCETPQTWIDMARASASLDELLIDHCNCELKAAQTAMFLLRRYALDKDSGQSLLAWAKPYEEFVYHKD
RDIELFLARDVKKNELVANLQPNQHFAFAQDLIPPLIRLIKEEFHHFEQVLELMHARHIPYRNIRAGRYAKGMMSHVTTH
EKDILRDKLIVGAYIEARSCERFAKLAPYLDTELSKFYVSLLRSEARHFEDYLKLAQLVSTEDITERVAYFGEREAELIM
APDDEFHFHSGQPLVA

Sequences:

>Translated_256_residues
MQQLLAPVHAFLRCETPQTWIDMARASASLDELLIDHCNCELKAAQTAMFLLRRYALDKDSGQSLLAWAKPYEEFVYHKD
RDIELFLARDVKKNELVANLQPNQHFAFAQDLIPPLIRLIKEEFHHFEQVLELMHARHIPYRNIRAGRYAKGMMSHVTTH
EKDILRDKLIVGAYIEARSCERFAKLAPYLDTELSKFYVSLLRSEARHFEDYLKLAQLVSTEDITERVAYFGEREAELIM
APDDEFHFHSGQPLVA
>Mature_256_residues
MQQLLAPVHAFLRCETPQTWIDMARASASLDELLIDHCNCELKAAQTAMFLLRRYALDKDSGQSLLAWAKPYEEFVYHKD
RDIELFLARDVKKNELVANLQPNQHFAFAQDLIPPLIRLIKEEFHHFEQVLELMHARHIPYRNIRAGRYAKGMMSHVTTH
EKDILRDKLIVGAYIEARSCERFAKLAPYLDTELSKFYVSLLRSEARHFEDYLKLAQLVSTEDITERVAYFGEREAELIM
APDDEFHFHSGQPLVA

Specific function: Production of the modified nucleoside 2-methylthio-cis- ribozeatin (MS[2]IO[6]A) found in some tRNAs. Catalyzes the oxygen-dependent transformation of MS[2]I[6]A into MS[2]IO[6]A [H]

COG id: COG4445

COG function: function code FJ; Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012347
- InterPro:   IPR010386 [H]

Pfam domain/function: PF06175 MiaE [H]

EC number: NA

Molecular weight: Translated: 29832; Mature: 29832

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQLLAPVHAFLRCETPQTWIDMARASASLDELLIDHCNCELKAAQTAMFLLRRYALDKD
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
SGQSLLAWAKPYEEFVYHKDRDIELFLARDVKKNELVANLQPNQHFAFAQDLIPPLIRLI
CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHEEECCCCCCHHHHHHHHHHHHHHHH
KEEFHHFEQVLELMHARHIPYRNIRAGRYAKGMMSHVTTHEKDILRDKLIVGAYIEARSC
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERFAKLAPYLDTELSKFYVSLLRSEARHFEDYLKLAQLVSTEDITERVAYFGEREAELIM
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
APDDEFHFHSGQPLVA
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQQLLAPVHAFLRCETPQTWIDMARASASLDELLIDHCNCELKAAQTAMFLLRRYALDKD
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
SGQSLLAWAKPYEEFVYHKDRDIELFLARDVKKNELVANLQPNQHFAFAQDLIPPLIRLI
CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHEEECCCCCCHHHHHHHHHHHHHHHH
KEEFHHFEQVLELMHARHIPYRNIRAGRYAKGMMSHVTTHEKDILRDKLIVGAYIEARSC
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERFAKLAPYLDTELSKFYVSLLRSEARHFEDYLKLAQLVSTEDITERVAYFGEREAELIM
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
APDDEFHFHSGQPLVA
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8253666; 11677609 [H]