Click here to switch to the map view.

The map label for this gene is tsgA [H]

Identifier: 117920945

GI number: 117920945

Start: 2993587

End: 2994771

Strand: Reverse

Name: tsgA [H]

Synonym: Shewana3_2502

Alternate gene names: 117920945

Gene position: 2994771-2993587 (Counterclockwise)

Preceding gene: 117920946

Following gene: 117920943

Centisome position: 60.23

GC content: 45.91

Gene sequence:

>1185_bases
ATGACAAAAATGAATAATAAAATCACCTTAACTGCCATTAGTTTTCTCGCGAACTTTATTATGGCGGGTTTTGCGACGCA
ATTTGGGATGTTGATAGAACCCATAGCGGAGAAGTTTGCGGCCGATGTGAATGATGTGGCTTCAATCTTCTCCTTACTTA
ATGGTGGCGCATTGGCAGGGACCATTGCCGCCTTCTTCTTTATTGAAAAGTTGGGCATCAAGCGGATCACCTTACTCAGT
TACAGTCTAGTCGCGCTTTCTGCACTGGCATTACACCTTACCAGTTCGCTACAGCTAGTGATGGTGGCCATGACCTTAAT
TGGATTCTGCGGCGGGATTGGTCTGTGTATCGCTGGCACCATTGTGGTATCTGTATGGCAAGCCAAAATGCAGAGCACTA
TGTTAGTGGTGCAGGATGCGACCTTTAATGTTGCTGGGGTGGTGTTTCCGCTGATCACAACCTACGCCTTAACCAATGCC
TTATCTTGGAGTTACAGTTACTTAGCCGTGGGTTTGGTTGCCTTAGGCACGGTGATTATTAGCTTATTCACCAATTTTTC
TCTGTGCGAGCAATCATCGAATACGGAGGAGAAACAACAATCGGAGTGGAACTTCGGCATTATCAGCGGCGGTATCGGCT
TATTTTTAGGCATGCTGGCGCTGTATACCTTCCTCACGTGGGCGCCGTTATTTGTAAAACAAAAATTTGATATCCCATTT
GAGGAGGCGGGCAATATCATTACCCAATACTGGTCGGCCGCGCTGATTGGTGCCTTAATTTCAACCCTGATCGTGACCCG
GGTAAAAATTCATCATTTCTTAGTTGGTATTATTGGTTCTGCCATGGTGATCACCTTCGTGATTGTGACTACCGATAAAC
TGAATTGGATTGCTTATTTAACCTATGGTTACGGCTTTGTCTGCGCGGCACTTTACAATGCATTTATTGCCTATGGCGTG
TCGTTTGTGAAGCAAGCCAGCAGCAAGAATGTCTCCTACATTCTGATCAGTGGCAGTACGGGCGCCATGTTTAGTCCGGC
GATCAGTTCGTTCTTCGAACGTATTATCGGCTTACAAACCGTGATGTATGTGATCCCCGTGCTTTATGCCGCAATCTTTA
TGTTGTTGATTGCATCGAGTCGGATGAAACCTGCCATGTCTGCACAATCACTTTCGGCAAGTTAA

Upstream 100 bases:

>100_bases
AACGCCAGTTATCCTTCAATAATATGATCGAACTTGCGCTCGCGACTGCGCTGAATTAGGTCTCTCGTTAACCTTTGCAC
CTTTCGCATTTCACGATGGA

Downstream 100 bases:

>100_bases
GCTAAAGGCCCATACTTGGTTGTTATCTGCCGAGTATGGGTGTTGTCGAAGTGGGTTAAATGCCTGCTTCGACAAAAGCT
TTAAGTGCATCCAGGTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MTKMNNKITLTAISFLANFIMAGFATQFGMLIEPIAEKFAADVNDVASIFSLLNGGALAGTIAAFFFIEKLGIKRITLLS
YSLVALSALALHLTSSLQLVMVAMTLIGFCGGIGLCIAGTIVVSVWQAKMQSTMLVVQDATFNVAGVVFPLITTYALTNA
LSWSYSYLAVGLVALGTVIISLFTNFSLCEQSSNTEEKQQSEWNFGIISGGIGLFLGMLALYTFLTWAPLFVKQKFDIPF
EEAGNIITQYWSAALIGALISTLIVTRVKIHHFLVGIIGSAMVITFVIVTTDKLNWIAYLTYGYGFVCAALYNAFIAYGV
SFVKQASSKNVSYILISGSTGAMFSPAISSFFERIIGLQTVMYVIPVLYAAIFMLLIASSRMKPAMSAQSLSAS

Sequences:

>Translated_394_residues
MTKMNNKITLTAISFLANFIMAGFATQFGMLIEPIAEKFAADVNDVASIFSLLNGGALAGTIAAFFFIEKLGIKRITLLS
YSLVALSALALHLTSSLQLVMVAMTLIGFCGGIGLCIAGTIVVSVWQAKMQSTMLVVQDATFNVAGVVFPLITTYALTNA
LSWSYSYLAVGLVALGTVIISLFTNFSLCEQSSNTEEKQQSEWNFGIISGGIGLFLGMLALYTFLTWAPLFVKQKFDIPF
EEAGNIITQYWSAALIGALISTLIVTRVKIHHFLVGIIGSAMVITFVIVTTDKLNWIAYLTYGYGFVCAALYNAFIAYGV
SFVKQASSKNVSYILISGSTGAMFSPAISSFFERIIGLQTVMYVIPVLYAAIFMLLIASSRMKPAMSAQSLSAS
>Mature_393_residues
TKMNNKITLTAISFLANFIMAGFATQFGMLIEPIAEKFAADVNDVASIFSLLNGGALAGTIAAFFFIEKLGIKRITLLSY
SLVALSALALHLTSSLQLVMVAMTLIGFCGGIGLCIAGTIVVSVWQAKMQSTMLVVQDATFNVAGVVFPLITTYALTNAL
SWSYSYLAVGLVALGTVIISLFTNFSLCEQSSNTEEKQQSEWNFGIISGGIGLFLGMLALYTFLTWAPLFVKQKFDIPFE
EAGNIITQYWSAALIGALISTLIVTRVKIHHFLVGIIGSAMVITFVIVTTDKLNWIAYLTYGYGFVCAALYNAFIAYGVS
FVKQASSKNVSYILISGSTGAMFSPAISSFFERIIGLQTVMYVIPVLYAAIFMLLIASSRMKPAMSAQSLSAS

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. TsgA family [H]

Homologues:

Organism=Escherichia coli, GI1789764, Length=373, Percent_Identity=24.1286863270777, Blast_Score=127, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42434; Mature: 42303

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKMNNKITLTAISFLANFIMAGFATQFGMLIEPIAEKFAADVNDVASIFSLLNGGALAG
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHH
TIAAFFFIEKLGIKRITLLSYSLVALSALALHLTSSLQLVMVAMTLIGFCGGIGLCIAGT
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVVSVWQAKMQSTMLVVQDATFNVAGVVFPLITTYALTNALSWSYSYLAVGLVALGTVII
HHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLFTNFSLCEQSSNTEEKQQSEWNFGIISGGIGLFLGMLALYTFLTWAPLFVKQKFDIPF
HHHHCHHHHHCCCCCHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EEAGNIITQYWSAALIGALISTLIVTRVKIHHFLVGIIGSAMVITFVIVTTDKLNWIAYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
TYGYGFVCAALYNAFIAYGVSFVKQASSKNVSYILISGSTGAMFSPAISSFFERIIGLQT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
VMYVIPVLYAAIFMLLIASSRMKPAMSAQSLSAS
HHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC
>Mature Secondary Structure 
TKMNNKITLTAISFLANFIMAGFATQFGMLIEPIAEKFAADVNDVASIFSLLNGGALAG
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHH
TIAAFFFIEKLGIKRITLLSYSLVALSALALHLTSSLQLVMVAMTLIGFCGGIGLCIAGT
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVVSVWQAKMQSTMLVVQDATFNVAGVVFPLITTYALTNALSWSYSYLAVGLVALGTVII
HHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLFTNFSLCEQSSNTEEKQQSEWNFGIISGGIGLFLGMLALYTFLTWAPLFVKQKFDIPF
HHHHCHHHHHCCCCCHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EEAGNIITQYWSAALIGALISTLIVTRVKIHHFLVGIIGSAMVITFVIVTTDKLNWIAYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
TYGYGFVCAALYNAFIAYGVSFVKQASSKNVSYILISGSTGAMFSPAISSFFERIIGLQT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
VMYVIPVLYAAIFMLLIASSRMKPAMSAQSLSAS
HHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA