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The map label for this gene is viuA [H]

Identifier: 117920943

GI number: 117920943

Start: 2990199

End: 2992472

Strand: Reverse

Name: viuA [H]

Synonym: Shewana3_2500

Alternate gene names: 117920943

Gene position: 2992472-2990199 (Counterclockwise)

Preceding gene: 117920945

Following gene: 117920942

Centisome position: 60.18

GC content: 43.54

Gene sequence:

>2274_bases
ATGTCTAACAAAAAGTTTAACAACAAGTCTTACACCCAAAAATCGACCAAGAGTTCCACCTTCTCCTTATCGTTAACGCG
TGCGCCATTAGCGCTGGCCATTTCGGCGGCGTTAAGCACGGCCGCATGGGCGCAAACCGATGCTATCGATAAACCTGAGC
CTAGCAATGATATGGAAATCATGGTGGTGACTGCAGATTTTCGCAGTGCCAGTTTAGAGAAAATGCCATCGAGCATTACC
GTTATCGATGCCCAGCAAATTCAAGATGAAAGTGCCCAGCACTTTGAAGACGTGATGAGTTCTATCGCCAACTTTAACTG
GTCGGGTGGCAGCTCACGTCCTAAGTATTTCCAGATCCGCGGCGTAGGTGAGCAGGAACAATATCAAGGCGCGCCTAACT
CATCTGTAGGTTATATCATTGATGATATTGATTTATCTGGTATCGGCATGGTGTCGAGCATGTACGATCTGCAGCAGGTC
GAAGTGTTACGCGGCCCGCAGGGCACCCGCTATGGCGCCAATGCGTTAGCGGGCTTGATTTACCTAAAGAGCAACGACCC
GACCGATGTGTTTGAACATGGCGCCGAGGTCTCTTTAGGCAATGACGATTTGCAAACCTTCAGCGGTTTTAGCTCTGGGC
CGTTAACCGATTCGGGCAAATTGTTATACCGCGTGTCGCTGCAGCAACATCAACAAAATGGTTATCGCGATAATCTCTAT
TTAAATAAAGAAGATACCAATGGTCGTGATGAATTTACTGGTCGCGCTAAATTACGCTGGTATGCCAGCGATAATCTGCA
ACTTGATTTAACTCTGCTGCATGCCGATTTTGATAACGGCTACGATGCCTGGAGCTTAACCAACGATCCTAAACATACTA
TTTCGGATCAGCCGGGTGTCGATAGCCAGCGCACCACGGGCGCTGGATTTAAAGCAACCTACTCGGGCGCAGAGTCTTTC
GAGCTTACCTCGCTGACCTCATTTGCCAATACCGATCATCATTATAGTTACGATGGCGATTGGGCAAACCCTGAATATTG
GGCATCCAAGCAATGTGATATTTATGATGCGGATTGGAATTCAATTGGAAAGTTACCTTGTGTTTATGATGCAACATGGT
CAAAAGTGGGTCAGAGAAAAACGTTTACACAAGAATTACGTCTTACTTCAAGTGATGCTGGAAGAATATTTAACGAGTCT
ACAGATTGGTTAATTGGAGTTTACTTTTCGAGTTTGCAGGAAGACAACAGTCTGATCGACTATGCCAAATATAGTAATGG
TGGTTTGAATCCCAGTTTTAAAGAAAGAACTAAATATTTAGACTCAACATATGATGCGCAAAATTACGCAATATTTGGTC
AACTCGATATTGATATGAGTAATGATTATTTATTGTCACTTGGACTGAGGTTAGAGAATCGCTCGAGTGATTATAGCGAT
ACAAATCTGGATGATTTTTCTCCATCAGAAACAATGTGGGGTGGTCATCTTGCTTTAAGTAAAGCACTTAGTGAACAGCA
TAATGCTTACATTCGAGTTGCTAGAGGATATAAAGCGGGTGGTTTTAATATGACGCTTCCTGCTGATTTCAGCGATAAAA
AGGAGTTTAATACTGAAACTTTATATAACTATGAATTAGGTCTTAAATCCTCATGGTTATCAGGAGCGTTAAGTACAAAT
GTTGCTCTTTTTTATATGGATAGACAAGACCAACAAGTATCTGCATCTCAACAAAATCCTGAAGATTTAAGTGAGTTTAT
TCTTTTTATCGATAATGCCGGAAGTTCAAAAAACTATGGCTTAGAGATTGATGCTAATTGGTATATCGACAGTAATTGGC
ATTTATATTCTAGCGTTGGTTACTTAAATACAGCCTATGGTGATTATCAATACGAAGTAGCTGAAGACCAGTTTGTGGAT
TTAACGGGTCGCGATTTGGCCCATTCACCACACTTAACCTACAGCTTAGGCGGTACGTATCGTGCGAACTCGGGTTGGTT
TGCCAACGTCAACATGAGTGGTAAGAGTGAGTTTTACTACTCAGACAGCAACGACTCGCGCTCTGAGCCATACACCATTG
TGAATGCGCGCTTAGGTTACGAGGCGAGTGCTTGGTCGGCGTATTTATGGGGCCGCAACCTGTTCGATGAAGAATATGGC
GTGCGTGGTTTCTATTTTGGTAATGAGCCGGATAACGGCTGGGCGGAAAAGCAATATATCCGCTACGGCGACCCACGCCA
AATCGGGGTGACACTAAACGTTAAGTTTATGTAA

Upstream 100 bases:

>100_bases
AACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAATCAACAGCACACTTCTGAATCGCTTATTCGTTGCCGGATCTC
AAACATGTATTTGAGGTCCT

Downstream 100 bases:

>100_bases
TCCCTTAAGAATGATACATCAGATGTCAGGCTGTGCTCGCTCATTGCGTCACCGCCTGACGATTGCATTATTAGCATTTG
ACCTAAGGAGTGAAGATGAA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 757; Mature: 756

Protein sequence:

>757_residues
MSNKKFNNKSYTQKSTKSSTFSLSLTRAPLALAISAALSTAAWAQTDAIDKPEPSNDMEIMVVTADFRSASLEKMPSSIT
VIDAQQIQDESAQHFEDVMSSIANFNWSGGSSRPKYFQIRGVGEQEQYQGAPNSSVGYIIDDIDLSGIGMVSSMYDLQQV
EVLRGPQGTRYGANALAGLIYLKSNDPTDVFEHGAEVSLGNDDLQTFSGFSSGPLTDSGKLLYRVSLQQHQQNGYRDNLY
LNKEDTNGRDEFTGRAKLRWYASDNLQLDLTLLHADFDNGYDAWSLTNDPKHTISDQPGVDSQRTTGAGFKATYSGAESF
ELTSLTSFANTDHHYSYDGDWANPEYWASKQCDIYDADWNSIGKLPCVYDATWSKVGQRKTFTQELRLTSSDAGRIFNES
TDWLIGVYFSSLQEDNSLIDYAKYSNGGLNPSFKERTKYLDSTYDAQNYAIFGQLDIDMSNDYLLSLGLRLENRSSDYSD
TNLDDFSPSETMWGGHLALSKALSEQHNAYIRVARGYKAGGFNMTLPADFSDKKEFNTETLYNYELGLKSSWLSGALSTN
VALFYMDRQDQQVSASQQNPEDLSEFILFIDNAGSSKNYGLEIDANWYIDSNWHLYSSVGYLNTAYGDYQYEVAEDQFVD
LTGRDLAHSPHLTYSLGGTYRANSGWFANVNMSGKSEFYYSDSNDSRSEPYTIVNARLGYEASAWSAYLWGRNLFDEEYG
VRGFYFGNEPDNGWAEKQYIRYGDPRQIGVTLNVKFM

Sequences:

>Translated_757_residues
MSNKKFNNKSYTQKSTKSSTFSLSLTRAPLALAISAALSTAAWAQTDAIDKPEPSNDMEIMVVTADFRSASLEKMPSSIT
VIDAQQIQDESAQHFEDVMSSIANFNWSGGSSRPKYFQIRGVGEQEQYQGAPNSSVGYIIDDIDLSGIGMVSSMYDLQQV
EVLRGPQGTRYGANALAGLIYLKSNDPTDVFEHGAEVSLGNDDLQTFSGFSSGPLTDSGKLLYRVSLQQHQQNGYRDNLY
LNKEDTNGRDEFTGRAKLRWYASDNLQLDLTLLHADFDNGYDAWSLTNDPKHTISDQPGVDSQRTTGAGFKATYSGAESF
ELTSLTSFANTDHHYSYDGDWANPEYWASKQCDIYDADWNSIGKLPCVYDATWSKVGQRKTFTQELRLTSSDAGRIFNES
TDWLIGVYFSSLQEDNSLIDYAKYSNGGLNPSFKERTKYLDSTYDAQNYAIFGQLDIDMSNDYLLSLGLRLENRSSDYSD
TNLDDFSPSETMWGGHLALSKALSEQHNAYIRVARGYKAGGFNMTLPADFSDKKEFNTETLYNYELGLKSSWLSGALSTN
VALFYMDRQDQQVSASQQNPEDLSEFILFIDNAGSSKNYGLEIDANWYIDSNWHLYSSVGYLNTAYGDYQYEVAEDQFVD
LTGRDLAHSPHLTYSLGGTYRANSGWFANVNMSGKSEFYYSDSNDSRSEPYTIVNARLGYEASAWSAYLWGRNLFDEEYG
VRGFYFGNEPDNGWAEKQYIRYGDPRQIGVTLNVKFM
>Mature_756_residues
SNKKFNNKSYTQKSTKSSTFSLSLTRAPLALAISAALSTAAWAQTDAIDKPEPSNDMEIMVVTADFRSASLEKMPSSITV
IDAQQIQDESAQHFEDVMSSIANFNWSGGSSRPKYFQIRGVGEQEQYQGAPNSSVGYIIDDIDLSGIGMVSSMYDLQQVE
VLRGPQGTRYGANALAGLIYLKSNDPTDVFEHGAEVSLGNDDLQTFSGFSSGPLTDSGKLLYRVSLQQHQQNGYRDNLYL
NKEDTNGRDEFTGRAKLRWYASDNLQLDLTLLHADFDNGYDAWSLTNDPKHTISDQPGVDSQRTTGAGFKATYSGAESFE
LTSLTSFANTDHHYSYDGDWANPEYWASKQCDIYDADWNSIGKLPCVYDATWSKVGQRKTFTQELRLTSSDAGRIFNEST
DWLIGVYFSSLQEDNSLIDYAKYSNGGLNPSFKERTKYLDSTYDAQNYAIFGQLDIDMSNDYLLSLGLRLENRSSDYSDT
NLDDFSPSETMWGGHLALSKALSEQHNAYIRVARGYKAGGFNMTLPADFSDKKEFNTETLYNYELGLKSSWLSGALSTNV
ALFYMDRQDQQVSASQQNPEDLSEFILFIDNAGSSKNYGLEIDANWYIDSNWHLYSSVGYLNTAYGDYQYEVAEDQFVDL
TGRDLAHSPHLTYSLGGTYRANSGWFANVNMSGKSEFYYSDSNDSRSEPYTIVNARLGYEASAWSAYLWGRNLFDEEYGV
RGFYFGNEPDNGWAEKQYIRYGDPRQIGVTLNVKFM

Specific function: Receptor for ferric vibriobactin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug [H]

EC number: NA

Molecular weight: Translated: 84933; Mature: 84802

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKKFNNKSYTQKSTKSSTFSLSLTRAPLALAISAALSTAAWAQTDAIDKPEPSNDMEI
CCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
MVVTADFRSASLEKMPSSITVIDAQQIQDESAQHFEDVMSSIANFNWSGGSSRPKYFQIR
EEEEECCCCHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
GVGEQEQYQGAPNSSVGYIIDDIDLSGIGMVSSMYDLQQVEVLRGPQGTRYGANALAGLI
ECCCHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
YLKSNDPTDVFEHGAEVSLGNDDLQTFSGFSSGPLTDSGKLLYRVSLQQHQQNGYRDNLY
EEECCCCHHHHHCCCEEEECCCHHHHHCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCEE
LNKEDTNGRDEFTGRAKLRWYASDNLQLDLTLLHADFDNGYDAWSLTNDPKHTISDQPGV
EECCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCC
DSQRTTGAGFKATYSGAESFELTSLTSFANTDHHYSYDGDWANPEYWASKQCDIYDADWN
CCCCCCCCCCEEEECCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
SIGKLPCVYDATWSKVGQRKTFTQELRLTSSDAGRIFNESTDWLIGVYFSSLQEDNSLID
CCCCCCEEECCHHHHHCCCHHHHHHHEECCCCCCCEECCCCCEEEEEEHHHHCCCCCEEE
YAKYSNGGLNPSFKERTKYLDSTYDAQNYAIFGQLDIDMSNDYLLSLGLRLENRSSDYSD
EHCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCCC
TNLDDFSPSETMWGGHLALSKALSEQHNAYIRVARGYKAGGFNMTLPADFSDKKEFNTET
CCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCE
LYNYELGLKSSWLSGALSTNVALFYMDRQDQQVSASQQNPEDLSEFILFIDNAGSSKNYG
EEEEECCCCCHHHCCCHHCCEEEEEECCCCCHHCCCCCCHHHHHEEEEEEECCCCCCCCC
LEIDANWYIDSNWHLYSSVGYLNTAYGDYQYEVAEDQFVDLTGRDLAHSPHLTYSLGGTY
EEEECEEEECCCEEEEEECCCEEECCCCEEEEECCCEEEECCCCCCCCCCCEEEECCCEE
RANSGWFANVNMSGKSEFYYSDSNDSRSEPYTIVNARLGYEASAWSAYLWGRNLFDEEYG
ECCCCEEEEEEECCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCC
VRGFYFGNEPDNGWAEKQYIRYGDPRQIGVTLNVKFM
CEEEECCCCCCCCCCCCHHEECCCCCEEEEEEEEEEC
>Mature Secondary Structure 
SNKKFNNKSYTQKSTKSSTFSLSLTRAPLALAISAALSTAAWAQTDAIDKPEPSNDMEI
CCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
MVVTADFRSASLEKMPSSITVIDAQQIQDESAQHFEDVMSSIANFNWSGGSSRPKYFQIR
EEEEECCCCHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
GVGEQEQYQGAPNSSVGYIIDDIDLSGIGMVSSMYDLQQVEVLRGPQGTRYGANALAGLI
ECCCHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
YLKSNDPTDVFEHGAEVSLGNDDLQTFSGFSSGPLTDSGKLLYRVSLQQHQQNGYRDNLY
EEECCCCHHHHHCCCEEEECCCHHHHHCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCEE
LNKEDTNGRDEFTGRAKLRWYASDNLQLDLTLLHADFDNGYDAWSLTNDPKHTISDQPGV
EECCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCC
DSQRTTGAGFKATYSGAESFELTSLTSFANTDHHYSYDGDWANPEYWASKQCDIYDADWN
CCCCCCCCCCEEEECCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
SIGKLPCVYDATWSKVGQRKTFTQELRLTSSDAGRIFNESTDWLIGVYFSSLQEDNSLID
CCCCCCEEECCHHHHHCCCHHHHHHHEECCCCCCCEECCCCCEEEEEEHHHHCCCCCEEE
YAKYSNGGLNPSFKERTKYLDSTYDAQNYAIFGQLDIDMSNDYLLSLGLRLENRSSDYSD
EHCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCCC
TNLDDFSPSETMWGGHLALSKALSEQHNAYIRVARGYKAGGFNMTLPADFSDKKEFNTET
CCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCE
LYNYELGLKSSWLSGALSTNVALFYMDRQDQQVSASQQNPEDLSEFILFIDNAGSSKNYG
EEEEECCCCCHHHCCCHHCCEEEEEECCCCCHHCCCCCCHHHHHEEEEEEECCCCCCCCC
LEIDANWYIDSNWHLYSSVGYLNTAYGDYQYEVAEDQFVDLTGRDLAHSPHLTYSLGGTY
EEEECEEEECCCEEEEEECCCEEECCCCEEEEECCCEEEECCCCCCCCCCCEEEECCCEE
RANSGWFANVNMSGKSEFYYSDSNDSRSEPYTIVNARLGYEASAWSAYLWGRNLFDEEYG
ECCCCEEEEEEECCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCC
VRGFYFGNEPDNGWAEKQYIRYGDPRQIGVTLNVKFM
CEEEECCCCCCCCCCCCHHEECCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1317381 [H]