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The map label for this gene is ndpA [C]

Identifier: 117920869

GI number: 117920869

Start: 2908992

End: 2910020

Strand: Reverse

Name: ndpA [C]

Synonym: Shewana3_2426

Alternate gene names: 117920869

Gene position: 2910020-2908992 (Counterclockwise)

Preceding gene: 117920872

Following gene: 117920867

Centisome position: 58.53

GC content: 47.62

Gene sequence:

>1029_bases
ATGAGTATTAACATCGAACAAGCAATTATTCACGAGATTTCCCAGGACAGTCAGGGGCAATTACGCTGCCGTTTACGTCC
TCAACCTCTGCTGAACAGTCAGGCTGTCGAGATGATGCTGGAAGAATTGCATCAGACTTATACCAGCAAATCCGGCAAAG
GATTTGGCTATTTTGGTATCCACGGTGATGACGGTGAAGCCAATCCAGCTTTTTCTAATGCGCTGCAGGAATACCGTGCA
GGGGATTTAGGCTTCGTCGAATTTACCGGCCAAGCCAGTAAGTTGTTGCAGGAAGAGTTGGCAAAATATGATTTTAGCCA
AGGCGGATTCCTGTTGATGTCCTGCTATACCAGCATGGCGAGTGATTTTTTGTTTGTGGCGCTGCTCAGTGCCAAATCAT
CGATGACGGTACTCGATGATATGGAACTGTCGCAAAACAACCACTTAGATTTAAGCAATATTCAATTAGCGGCGCGTATC
GATCTTACCGAATGGCAGGCCGATAAGGACTCTCGTAAGTACATCTCCTTTATCCGTGGCCGTGCTGGTCGTAAGGTTGC
CGATTTCTTCCTCGACTTTATGGGCTGCGTTGAAGGGGTGAATACTAAGGCGCAAAACAAAACCCTGATGAACGCGGTGG
AAGACTTTGTTGCCAGTAGCGAACTGACGAAGGAAGAGCGTCAGCAATGCCGTAACAAAGTGTTTGAGTATTGCTCCGAG
CGTTTCGACGAAGGCGCAGACATTGAGATCAAAGATTTAGCCGATGAACTCGCCGACCAAGGTATGGAGTCTTTCTATGA
CTTTGCCCGTGGCGGCAGTTATGAGTTGGATGAAGAATTTCCCGCCGATAAATCGACCTTAAGACAATTGAAGAAGTTTT
CGGGTACTGGTGGCGGCGTCACCATTAGCTTCGATGGTGGCCATTTAGGGCAGCGAGTGATTTACGATCCGATTTCCGAC
ACGCTCTTGATTAAAGGCGTGCCCGCTAACCTAAAAGACCAGTTAGATAGACGTCTTAAGGGCGAATAA

Upstream 100 bases:

>100_bases
GAGTATTTCGATTGGATTGCCATAATCAAAAAATGTTTCACTTTGGAATGGATTAGCGGCATATAATAGCGGATTTATTC
CAGCATCACTATCAGGGCTT

Downstream 100 bases:

>100_bases
GCCGCTAGGGATATTGTCACTTAAGCTTTAAGCGTCCGCTTTTTAAGCTGCCAGCATTAAACAAAAAGGCCGAGGATGAA
TCCTCGGCCTTTCTCTTTTG

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSINIEQAIIHEISQDSQGQLRCRLRPQPLLNSQAVEMMLEELHQTYTSKSGKGFGYFGIHGDDGEANPAFSNALQEYRA
GDLGFVEFTGQASKLLQEELAKYDFSQGGFLLMSCYTSMASDFLFVALLSAKSSMTVLDDMELSQNNHLDLSNIQLAARI
DLTEWQADKDSRKYISFIRGRAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSELTKEERQQCRNKVFEYCSE
RFDEGADIEIKDLADELADQGMESFYDFARGGSYELDEEFPADKSTLRQLKKFSGTGGGVTISFDGGHLGQRVIYDPISD
TLLIKGVPANLKDQLDRRLKGE

Sequences:

>Translated_342_residues
MSINIEQAIIHEISQDSQGQLRCRLRPQPLLNSQAVEMMLEELHQTYTSKSGKGFGYFGIHGDDGEANPAFSNALQEYRA
GDLGFVEFTGQASKLLQEELAKYDFSQGGFLLMSCYTSMASDFLFVALLSAKSSMTVLDDMELSQNNHLDLSNIQLAARI
DLTEWQADKDSRKYISFIRGRAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSELTKEERQQCRNKVFEYCSE
RFDEGADIEIKDLADELADQGMESFYDFARGGSYELDEEFPADKSTLRQLKKFSGTGGGVTISFDGGHLGQRVIYDPISD
TLLIKGVPANLKDQLDRRLKGE
>Mature_341_residues
SINIEQAIIHEISQDSQGQLRCRLRPQPLLNSQAVEMMLEELHQTYTSKSGKGFGYFGIHGDDGEANPAFSNALQEYRAG
DLGFVEFTGQASKLLQEELAKYDFSQGGFLLMSCYTSMASDFLFVALLSAKSSMTVLDDMELSQNNHLDLSNIQLAARID
LTEWQADKDSRKYISFIRGRAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSELTKEERQQCRNKVFEYCSER
FDEGADIEIKDLADELADQGMESFYDFARGGSYELDEEFPADKSTLRQLKKFSGTGGGVTISFDGGHLGQRVIYDPISDT
LLIKGVPANLKDQLDRRLKGE

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family [H]

Homologues:

Organism=Escherichia coli, GI1788513, Length=341, Percent_Identity=44.574780058651, Blast_Score=309, Evalue=2e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007358 [H]

Pfam domain/function: PF04245 NA37 [H]

EC number: NA

Molecular weight: Translated: 38239; Mature: 38108

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINIEQAIIHEISQDSQGQLRCRLRPQPLLNSQAVEMMLEELHQTYTSKSGKGFGYFGI
CCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
HGDDGEANPAFSNALQEYRAGDLGFVEFTGQASKLLQEELAKYDFSQGGFLLMSCYTSMA
ECCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
SDFLFVALLSAKSSMTVLDDMELSQNNHLDLSNIQLAARIDLTEWQADKDSRKYISFIRG
HHHHHHHHHHCCCCCEEHHCCHHCCCCCCCCCCEEEEEEECHHHHCCCCHHHHHHHHHHC
RAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSELTKEERQQCRNKVFEYCSE
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RFDEGADIEIKDLADELADQGMESFYDFARGGSYELDEEFPADKSTLRQLKKFSGTGGGV
HCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
TISFDGGHLGQRVIYDPISDTLLIKGVPANLKDQLDRRLKGE
EEEECCCCCCCHHEECCCCCEEEEECCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SINIEQAIIHEISQDSQGQLRCRLRPQPLLNSQAVEMMLEELHQTYTSKSGKGFGYFGI
CCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
HGDDGEANPAFSNALQEYRAGDLGFVEFTGQASKLLQEELAKYDFSQGGFLLMSCYTSMA
ECCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
SDFLFVALLSAKSSMTVLDDMELSQNNHLDLSNIQLAARIDLTEWQADKDSRKYISFIRG
HHHHHHHHHHCCCCCEEHHCCHHCCCCCCCCCCEEEEEEECHHHHCCCCHHHHHHHHHHC
RAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSELTKEERQQCRNKVFEYCSE
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RFDEGADIEIKDLADELADQGMESFYDFARGGSYELDEEFPADKSTLRQLKKFSGTGGGV
HCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
TISFDGGHLGQRVIYDPISDTLLIKGVPANLKDQLDRRLKGE
EEEECCCCCCCHHEECCCCCEEEEECCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA