Click here to switch to the map view.

The map label for this gene is yafS [H]

Identifier: 117920811

GI number: 117920811

Start: 2846246

End: 2846980

Strand: Reverse

Name: yafS [H]

Synonym: Shewana3_2368

Alternate gene names: 117920811

Gene position: 2846980-2846246 (Counterclockwise)

Preceding gene: 117920814

Following gene: 117920810

Centisome position: 57.26

GC content: 50.61

Gene sequence:

>735_bases
GTGTCGTATAACAGTTCTATGCGCAAACCCGAGCAATGGGACGATTTGCCCAATGGTCCTGCACTCCAACAAGCCGTTTC
CGATAAGCTTGCCGATTGGTGGCCAAGGGTGTTTGGCTATCATCTACTCAAACTCGGTCCCTTAAGCGCCGATCTCTCGA
GCATGGCATCCCCCGTTGCCCACCATTTCTCACTGTGCTCAGAACCCAATGCCTCGTTAATTGGCGATTTTTGCCATTTA
CCCCTACAGAATGGGGTGATCGATGCGGTGCTGATGAGCCTGCTGCTTGAATTTGAGGCAGATCCTTACCGTATCCTGCG
GGAAACCGACAGGGTGCTGATCGCCGGCGGCTACTTATTTATCGTGGGCTTTAATCCCCTAAGCCCAGTGTTTCTCGGTA
AGTTATGGCCAAAATTTCAGGACAATCTACCCTGGTGCGGGCGTTTTTTTATGCCCTCTCGAGTGCGAGACTGGTTAGGC
TTATTAGGCTATCAAGTGGTCAGCGATGAACGTTTAGTCTACCACCCGTTAATTGGTGAGTTTAATGATGGCCGTTTTAT
GCAGCAAACCTTGGCCTCATGGCTACCCAGTGCGGGCAGCTTATATTTGATTGTGGCACGTAAATTAGAGTCGCCATTAA
CGCCCATCCGCGACAAACGTAAAGTATTACAGCCGAATTGGACCACAGCCCCGAGCGCGGGTCGAACCGGGCATTTATCC
GAACATACCAAATAA

Upstream 100 bases:

>100_bases
CGATTGCCCATGACAATTGCTCATGGCAAACGCCAAAGCGGTAATGGGCAAGATGGATGATTTGCATTAAGCACATGGGT
AACGGGAAGGGAGGAGACTT

Downstream 100 bases:

>100_bases
TTTCATTCATTAATGAGTCTGTTATGCGAATAACCTTAAGGCAACTTGCGGTATTTGAAGCCGTTGCACGCAGTGGGCAA
GTGGCAAAAGCGGCAGAGCA

Product: type 11 methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSYNSSMRKPEQWDDLPNGPALQQAVSDKLADWWPRVFGYHLLKLGPLSADLSSMASPVAHHFSLCSEPNASLIGDFCHL
PLQNGVIDAVLMSLLLEFEADPYRILRETDRVLIAGGYLFIVGFNPLSPVFLGKLWPKFQDNLPWCGRFFMPSRVRDWLG
LLGYQVVSDERLVYHPLIGEFNDGRFMQQTLASWLPSAGSLYLIVARKLESPLTPIRDKRKVLQPNWTTAPSAGRTGHLS
EHTK

Sequences:

>Translated_244_residues
MSYNSSMRKPEQWDDLPNGPALQQAVSDKLADWWPRVFGYHLLKLGPLSADLSSMASPVAHHFSLCSEPNASLIGDFCHL
PLQNGVIDAVLMSLLLEFEADPYRILRETDRVLIAGGYLFIVGFNPLSPVFLGKLWPKFQDNLPWCGRFFMPSRVRDWLG
LLGYQVVSDERLVYHPLIGEFNDGRFMQQTLASWLPSAGSLYLIVARKLESPLTPIRDKRKVLQPNWTTAPSAGRTGHLS
EHTK
>Mature_243_residues
SYNSSMRKPEQWDDLPNGPALQQAVSDKLADWWPRVFGYHLLKLGPLSADLSSMASPVAHHFSLCSEPNASLIGDFCHLP
LQNGVIDAVLMSLLLEFEADPYRILRETDRVLIAGGYLFIVGFNPLSPVFLGKLWPKFQDNLPWCGRFFMPSRVRDWLGL
LGYQVVSDERLVYHPLIGEFNDGRFMQQTLASWLPSAGSLYLIVARKLESPLTPIRDKRKVLQPNWTTAPSAGRTGHLSE
HTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081700, Length=227, Percent_Identity=36.5638766519824, Blast_Score=134, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 27534; Mature: 27403

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYNSSMRKPEQWDDLPNGPALQQAVSDKLADWWPRVFGYHLLKLGPLSADLSSMASPVA
CCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
HHFSLCSEPNASLIGDFCHLPLQNGVIDAVLMSLLLEFEADPYRILRETDRVLIAGGYLF
HHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCEEEECCEEE
IVGFNPLSPVFLGKLWPKFQDNLPWCGRFFMPSRVRDWLGLLGYQVVSDERLVYHPLIGE
EEECCCCCHHHHHHHCHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC
FNDGRFMQQTLASWLPSAGSLYLIVARKLESPLTPIRDKRKVLQPNWTTAPSAGRTGHLS
CCCCHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
EHTK
CCCC
>Mature Secondary Structure 
SYNSSMRKPEQWDDLPNGPALQQAVSDKLADWWPRVFGYHLLKLGPLSADLSSMASPVA
CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
HHFSLCSEPNASLIGDFCHLPLQNGVIDAVLMSLLLEFEADPYRILRETDRVLIAGGYLF
HHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCEEEECCEEE
IVGFNPLSPVFLGKLWPKFQDNLPWCGRFFMPSRVRDWLGLLGYQVVSDERLVYHPLIGE
EEECCCCCHHHHHHHCHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC
FNDGRFMQQTLASWLPSAGSLYLIVARKLESPLTPIRDKRKVLQPNWTTAPSAGRTGHLS
CCCCHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
EHTK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]