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The map label for this gene is dnaQ [H]

Identifier: 117920808

GI number: 117920808

Start: 2844011

End: 2844739

Strand: Reverse

Name: dnaQ [H]

Synonym: Shewana3_2365

Alternate gene names: 117920808

Gene position: 2844739-2844011 (Counterclockwise)

Preceding gene: 117920810

Following gene: 117920807

Centisome position: 57.21

GC content: 47.74

Gene sequence:

>729_bases
ATGAATATTATCTCAAACGCAAGCCGTCAGGTTATTTTGGATACTGAAACCACGGGTATGAACCAAGGCAGTGGTGCAGT
GTATTTAGGCCACAGAATTATTGAGATAGGGTGCGTTGAGGTGATCAACCGCCGTTTAACGGGCCGTTATTTCCATCAAT
ATATCAATCCCGGCCAAGCGATTGACCCAGAAGCGATTGCGGTTCACGGCATCACCGATGAGCGCGTTGCCAATGAGCCT
AGGTTCCATCAGATAGCGCAGGAATTTATTGATTTTATCAGTGGCGCCGAAATTGTGGCCCATAACGCAAACTTCGACGT
GAGCTTTATGGACCATGAATTTTCGCTGTTGCAGCCATTAGGGCCAAAGACCAGTGAAATCTGTGAGATCTTAGACTCCC
TCGATATCGCAAAATTTTTACACCCTGGGCAAAAGAACAACTTAGACGCCCTATGTAAGCGCTACGGTATCGATAACTCT
CGCCGCCTGTACCACGGGGCATTACTCGACGCCGAGATCTTAGCCGATGTGTATTTGGCGATGACAGGCGGGCAGACCAA
GTTCAATCTCTCTAATGATGAAGTCGGTCAAGAGGCTGGGGGCATCCAACGCTTTGATCCGGCATCACTTAATCTTAAAG
TGATCAGCGCATCGGCCGATGAACTCGTTATGCATGAAAAGCGTCTTGATTTAGTCGCAAAATCAGGAAAATGCCTCTGG
AGAGGATAA

Upstream 100 bases:

>100_bases
GAAGATGTGGATCAGTTTTAGTTCAGTCATCAAATGGTTATCCGCAGCGTAAATACCGGCCGAGTATAACCAAAAAATGT
CATAAGAAGCGCATAAAAGT

Downstream 100 bases:

>100_bases
TTTATTGCCTATGACGATGTCGCTGCGAAAATCCTTACTGAATACCACATTAGTGCTCGGCGGCCTCTGCTTGAGCGCTT
CTTTGCTTGCCGCCGATGCT

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MNIISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINPGQAIDPEAIAVHGITDERVANEP
RFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLGPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNS
RRLYHGALLDAEILADVYLAMTGGQTKFNLSNDEVGQEAGGIQRFDPASLNLKVISASADELVMHEKRLDLVAKSGKCLW
RG

Sequences:

>Translated_242_residues
MNIISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINPGQAIDPEAIAVHGITDERVANEP
RFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLGPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNS
RRLYHGALLDAEILADVYLAMTGGQTKFNLSNDEVGQEAGGIQRFDPASLNLKVISASADELVMHEKRLDLVAKSGKCLW
RG
>Mature_242_residues
MNIISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINPGQAIDPEAIAVHGITDERVANEP
RFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLGPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNS
RRLYHGALLDAEILADVYLAMTGGQTKFNLSNDEVGQEAGGIQRFDPASLNLKVISASADELVMHEKRLDLVAKSGKCLW
RG

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=239, Percent_Identity=56.0669456066946, Blast_Score=275, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 26779; Mature: 26779

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINPGQA
CCCCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
IDPEAIAVHGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPL
CCCCEEEEECCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCHHHHCCC
GPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYLA
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHH
MTGGQTKFNLSNDEVGQEAGGIQRFDPASLNLKVISASADELVMHEKRLDLVAKSGKCLW
CCCCCEEEECCCHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEE
RG
CC
>Mature Secondary Structure
MNIISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINPGQA
CCCCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
IDPEAIAVHGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPL
CCCCEEEEECCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCHHHHCCC
GPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYLA
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHH
MTGGQTKFNLSNDEVGQEAGGIQRFDPASLNLKVISASADELVMHEKRLDLVAKSGKCLW
CCCCCEEEECCCHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEE
RG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3023634; 6316347; 3540531; 9278503; 1575709 [H]