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The map label for this gene is slyA [C]

Identifier: 117920669

GI number: 117920669

Start: 2676208

End: 2676642

Strand: Reverse

Name: slyA [C]

Synonym: Shewana3_2226

Alternate gene names: 117920669

Gene position: 2676642-2676208 (Counterclockwise)

Preceding gene: 117920670

Following gene: 117920668

Centisome position: 53.83

GC content: 49.43

Gene sequence:

>435_bases
ATGAAAACCTCATCAAATACCCTAGGCGCACTCTTAAGTGATATTACCCGCATGATGCGCCGTGTGTTCCAAGAAACCTA
CAGGCCCACGGCGGATTGCTCACTGACGTTATCGCAGGCAAGAGCCTTATTGCATATCGCCCGTAATGAAGGCCTTAAGC
AGATTGAGCTGGCGGATCGCCTCGAAATTAAACCTATCACGGCCGCGAGATTAATCGATGTGCTGTGTGATGCTGGGCTG
GTTGAACGCAGACCCGATGCCAAAGACAGACGCGCTTTTCAGTTATTTTTGACGGAGGCGGCCGCGCCCCATTTAGCCGA
AATTGAACGTGCCGTGACCATAGTGTACACCCAAGCCTTTAAAGGATTCGATGAAGCCGAGTCAGAGACTGTTATCCGGC
TGTTATCGCAAATCCATAAAAATTTTTCAGCTTAA

Upstream 100 bases:

>100_bases
GTCTGACTTTGCATTTTGTTGCCTTTGTTGATTGTGCTGGCAATTGCTTTACATTCGATGTCATCCATATAATAAGCAAT
GCTTACTATGTGGATGGCTT

Downstream 100 bases:

>100_bases
TCAAAGCAGATAAACCCATCCCCGTGATAGACATTTAGTGAAGTTGGAGTTGTTGTAATGAGTGACGCAAATCCTCAAGC
ACCTAAAGCGAATACGCGTA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator MarR Family; Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator TrmB; Transcription Regulator Protein

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MKTSSNTLGALLSDITRMMRRVFQETYRPTADCSLTLSQARALLHIARNEGLKQIELADRLEIKPITAARLIDVLCDAGL
VERRPDAKDRRAFQLFLTEAAAPHLAEIERAVTIVYTQAFKGFDEAESETVIRLLSQIHKNFSA

Sequences:

>Translated_144_residues
MKTSSNTLGALLSDITRMMRRVFQETYRPTADCSLTLSQARALLHIARNEGLKQIELADRLEIKPITAARLIDVLCDAGL
VERRPDAKDRRAFQLFLTEAAAPHLAEIERAVTIVYTQAFKGFDEAESETVIRLLSQIHKNFSA
>Mature_144_residues
MKTSSNTLGALLSDITRMMRRVFQETYRPTADCSLTLSQARALLHIARNEGLKQIELADRLEIKPITAARLIDVLCDAGL
VERRPDAKDRRAFQLFLTEAAAPHLAEIERAVTIVYTQAFKGFDEAESETVIRLLSQIHKNFSA

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16186; Mature: 16186

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSSNTLGALLSDITRMMRRVFQETYRPTADCSLTLSQARALLHIARNEGLKQIELADR
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LEIKPITAARLIDVLCDAGLVERRPDAKDRRAFQLFLTEAAAPHLAEIERAVTIVYTQAF
CCCCCHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KGFDEAESETVIRLLSQIHKNFSA
CCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTSSNTLGALLSDITRMMRRVFQETYRPTADCSLTLSQARALLHIARNEGLKQIELADR
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LEIKPITAARLIDVLCDAGLVERRPDAKDRRAFQLFLTEAAAPHLAEIERAVTIVYTQAF
CCCCCHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KGFDEAESETVIRLLSQIHKNFSA
CCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA