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The map label for this gene is 117920609

Identifier: 117920609

GI number: 117920609

Start: 2593702

End: 2594307

Strand: Direct

Name: 117920609

Synonym: Shewana3_2165

Alternate gene names: NA

Gene position: 2593702-2594307 (Clockwise)

Preceding gene: 117920608

Following gene: 117920611

Centisome position: 52.16

GC content: 50.5

Gene sequence:

>606_bases
GTGAGACTGGTAACGTTAAAAAAACTCGGCCCCTATTGGCTGGCGCTTATCGTCAGTCTGCTCTGCGCACTCTTGTATGT
TGCGGGACTTTTTACCCCGAGCATAGATAACCTGCTCGCCTATCGCCGCAGCGCCATCAGTGATGGCCAGTGGTGGCGTC
TGATCACAGGCAATCTGCTGCATACCAATCATTGGCACCTGCTGATGAACCTCGCAGGATTATGGGTAGTGTTGTTTTTG
CACCACTTTCATTATCGACTTAACGGATTAACCGCGCTGTTTATTCTGCTTTGTCTATTTGAAGGCATTGGCCTGTATCT
GGGTTATCCGCAGCTATTAGGTTATGTGGGGCTGAGTGGCATGTTACACGGCCTATTTACCTTTGGTGCAGTGCAGGATA
TACGCCGCAAAATGCGCTCGGGTTATTTGCTGCTGCTCGGCGTGATAGTCAAAGTCGGCCATGAACAGTTCTATGGTGCC
AGTGATGATGTGACCGCAATGATTGGTGCACGCGTGGCCACTGAGGCGCATTTAGTCGGCCTGATCTGTGGCTTAGTCTG
CGCGCTTATGGTGTTTGTGTACCAACGAAGCACACTAGCAAAGTAA

Upstream 100 bases:

>100_bases
CCTGCCATCTTCGCAAACGGGGCTTAGAGGATTACCTGCAAAATAAAGCAGAGGTGATGGCCTCGCTGGACAAGGCAACT
GCAACGGGTAAACCACAGGC

Downstream 100 bases:

>100_bases
ACCTCGCGCTTTGATTAATTCATACAATAAAAAACCGCCTCATATTGTTATGTTGGCGGCTTTTTATTAAGTAGTGAACC
TTGGTATCTGCTTGATTAGC

Product: rhomboid family protein

Products: NA

Alternate protein names: Integral Membrane Protein; Rhomboid Protein; Rhomboid Family Membrane Protein; Rhomboid-Like Protein; Peptidase; Rhomboid Family Integral Membrane Protein

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MRLVTLKKLGPYWLALIVSLLCALLYVAGLFTPSIDNLLAYRRSAISDGQWWRLITGNLLHTNHWHLLMNLAGLWVVLFL
HHFHYRLNGLTALFILLCLFEGIGLYLGYPQLLGYVGLSGMLHGLFTFGAVQDIRRKMRSGYLLLLGVIVKVGHEQFYGA
SDDVTAMIGARVATEAHLVGLICGLVCALMVFVYQRSTLAK

Sequences:

>Translated_201_residues
MRLVTLKKLGPYWLALIVSLLCALLYVAGLFTPSIDNLLAYRRSAISDGQWWRLITGNLLHTNHWHLLMNLAGLWVVLFL
HHFHYRLNGLTALFILLCLFEGIGLYLGYPQLLGYVGLSGMLHGLFTFGAVQDIRRKMRSGYLLLLGVIVKVGHEQFYGA
SDDVTAMIGARVATEAHLVGLICGLVCALMVFVYQRSTLAK
>Mature_201_residues
MRLVTLKKLGPYWLALIVSLLCALLYVAGLFTPSIDNLLAYRRSAISDGQWWRLITGNLLHTNHWHLLMNLAGLWVVLFL
HHFHYRLNGLTALFILLCLFEGIGLYLGYPQLLGYVGLSGMLHGLFTFGAVQDIRRKMRSGYLLLLGVIVKVGHEQFYGA
SDDVTAMIGARVATEAHLVGLICGLVCALMVFVYQRSTLAK

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22462; Mature: 22462

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLVTLKKLGPYWLALIVSLLCALLYVAGLFTPSIDNLLAYRRSAISDGQWWRLITGNLL
CCEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEHCCCEE
HTNHWHLLMNLAGLWVVLFLHHFHYRLNGLTALFILLCLFEGIGLYLGYPQLLGYVGLSG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
MLHGLFTFGAVQDIRRKMRSGYLLLLGVIVKVGHEQFYGASDDVTAMIGARVATEAHLVG
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LICGLVCALMVFVYQRSTLAK
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRLVTLKKLGPYWLALIVSLLCALLYVAGLFTPSIDNLLAYRRSAISDGQWWRLITGNLL
CCEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEHCCCEE
HTNHWHLLMNLAGLWVVLFLHHFHYRLNGLTALFILLCLFEGIGLYLGYPQLLGYVGLSG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
MLHGLFTFGAVQDIRRKMRSGYLLLLGVIVKVGHEQFYGASDDVTAMIGARVATEAHLVG
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LICGLVCALMVFVYQRSTLAK
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA