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The map label for this gene is pyrF [H]

Identifier: 117920426

GI number: 117920426

Start: 2359529

End: 2360224

Strand: Direct

Name: pyrF [H]

Synonym: Shewana3_1981

Alternate gene names: 117920426

Gene position: 2359529-2360224 (Clockwise)

Preceding gene: 117920425

Following gene: 117920427

Centisome position: 47.45

GC content: 50.72

Gene sequence:

>696_bases
ATGACGACCAAACCTATCCTCGTAGCGCTTGATTACGATAATAAAAACCACGCCTTACAACTGATAGATCAACTCGATCC
CAACATGTGCCGCCTCAAAGTGGGCAAAGAAATGTTTACCCTGTTTGGCCCACAATTGGTTAAAGACATTCACGACCGTG
GTTTCGATCTTTTCCTCGACCTAAAGTTTCACGATATTCCCAATACGGTCGCCAAAGCAGTTGCGGCTGCGGCAGAACTT
GGCGTGTGGATGACAAACGTGCATGCCAGCGGTGGCTTGGCCATGATGGAAGCGGCGAAAAAAGCGTTGCTGCCCTATGG
CAAGGATGCACCTCTGCTAATCGCAGTAACGGTACTTACTTCAATGAGTGATGAAGATTTAAAACTCATCGGCATTGATG
TGCCAGCTTTTGAACATGTGCAACGTCTCGCGAAACTCACCAAGCAGGCGGGCCTTGATGGTGTGGTCTGTTCGGCGCAA
GAGGCAAATGTACTAAAATCACTCTTAGGTCAAGATTTTAAACTTATCACCCCGGGGATCCGTCCACTGGGCAGCGACGT
GGGTGACCAACACCGGGTGATGACGCCACCGGAGGCGCTTGCAGCCGGTTCTGATTATTTAGTGATTGGTCGACCAATCA
CTAAGGCCGCCGATCCTCTGGCGGCGCTGCAGGCGATTCATCAATCTCTCGCTTGA

Upstream 100 bases:

>100_bases
CCCCTCCTGTAAAAAATGGGGCACCATTAAACGGATCCGTGGCTTAGACGGTGAATAACCTTTAGAAATACCTTGTTAGT
GTAACTCAGTTGGAGAGATG

Downstream 100 bases:

>100_bases
GTGCCATGATGAAAGCCATTGCGGCTTAAGCACTCATTCGCGCGTTAATTTGACCGTTCACGGAGAATGCCCATGCTGAA
TACTACGATGTTTAATTATC

Product: orotidine 5'-phosphate decarboxylase

Products: NA

Alternate protein names: OMP decarboxylase; OMPDCase; OMPdecase [H]

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MTTKPILVALDYDNKNHALQLIDQLDPNMCRLKVGKEMFTLFGPQLVKDIHDRGFDLFLDLKFHDIPNTVAKAVAAAAEL
GVWMTNVHASGGLAMMEAAKKALLPYGKDAPLLIAVTVLTSMSDEDLKLIGIDVPAFEHVQRLAKLTKQAGLDGVVCSAQ
EANVLKSLLGQDFKLITPGIRPLGSDVGDQHRVMTPPEALAAGSDYLVIGRPITKAADPLAALQAIHQSLA

Sequences:

>Translated_231_residues
MTTKPILVALDYDNKNHALQLIDQLDPNMCRLKVGKEMFTLFGPQLVKDIHDRGFDLFLDLKFHDIPNTVAKAVAAAAEL
GVWMTNVHASGGLAMMEAAKKALLPYGKDAPLLIAVTVLTSMSDEDLKLIGIDVPAFEHVQRLAKLTKQAGLDGVVCSAQ
EANVLKSLLGQDFKLITPGIRPLGSDVGDQHRVMTPPEALAAGSDYLVIGRPITKAADPLAALQAIHQSLA
>Mature_230_residues
TTKPILVALDYDNKNHALQLIDQLDPNMCRLKVGKEMFTLFGPQLVKDIHDRGFDLFLDLKFHDIPNTVAKAVAAAAELG
VWMTNVHASGGLAMMEAAKKALLPYGKDAPLLIAVTVLTSMSDEDLKLIGIDVPAFEHVQRLAKLTKQAGLDGVVCSAQE
ANVLKSLLGQDFKLITPGIRPLGSDVGDQHRVMTPPEALAAGSDYLVIGRPITKAADPLAALQAIHQSLA

Specific function: Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) [H]

COG id: COG0284

COG function: function code F; Orotidine-5'-phosphate decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OMP decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787537, Length=230, Percent_Identity=64.3478260869565, Blast_Score=308, Evalue=2e-85,

Paralogues:

None

Copy number: 6,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR014732
- InterPro:   IPR018089
- InterPro:   IPR001754
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00215 OMPdecase [H]

EC number: =4.1.1.23 [H]

Molecular weight: Translated: 24807; Mature: 24676

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS00599 AA_TRANSFER_CLASS_2 ; PS00156 OMPDECASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKPILVALDYDNKNHALQLIDQLDPNMCRLKVGKEMFTLFGPQLVKDIHDRGFDLFLD
CCCCCEEEEEECCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHCHHHHHHHHHCCCEEEEE
LKFHDIPNTVAKAVAAAAELGVWMTNVHASGGLAMMEAAKKALLPYGKDAPLLIAVTVLT
EEECCCCHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH
SMSDEDLKLIGIDVPAFEHVQRLAKLTKQAGLDGVVCSAQEANVLKSLLGQDFKLITPGI
CCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCEEECCCC
RPLGSDVGDQHRVMTPPEALAAGSDYLVIGRPITKAADPLAALQAIHQSLA
CCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TTKPILVALDYDNKNHALQLIDQLDPNMCRLKVGKEMFTLFGPQLVKDIHDRGFDLFLD
CCCCEEEEEECCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHCHHHHHHHHHCCCEEEEE
LKFHDIPNTVAKAVAAAAELGVWMTNVHASGGLAMMEAAKKALLPYGKDAPLLIAVTVLT
EEECCCCHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH
SMSDEDLKLIGIDVPAFEHVQRLAKLTKQAGLDGVVCSAQEANVLKSLLGQDFKLITPGI
CCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCEEECCCC
RPLGSDVGDQHRVMTPPEALAAGSDYLVIGRPITKAADPLAALQAIHQSLA
CCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]