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The map label for this gene is yqfA [H]

Identifier: 117920379

GI number: 117920379

Start: 2299251

End: 2299934

Strand: Reverse

Name: yqfA [H]

Synonym: Shewana3_1934

Alternate gene names: 117920379

Gene position: 2299934-2299251 (Counterclockwise)

Preceding gene: 117920389

Following gene: 117920376

Centisome position: 46.26

GC content: 45.47

Gene sequence:

>684_bases
ATGCCAAGCCAGAGTTTGATAGAGCCGCAAATGAGTCATGAAAAACCATTGAATATCAGTGGCTATAGCCTTAGTGAGGA
GATAGCCAATAGCATCAGCCATGGCCTTGGAGTGATCGCGGGTGTGGTCGGCTTAGTGTTTATGATCCTCAAGGGCGCCG
ACCACCTCACCAGCATTCAGCTCACAGGTGTTATTATTTATGGTGCAAGCCTTATCCTGTTGTTTTTAAGTTCTACCCTG
TATCACAGCGTAACGCATGTAGGCTGGAAACATAAACTCAAGATTGCCGATCACTGTGCCATCTACTGCTTAATTGCAGG
CACCTATACCCCTCTGATGTTAATCAGCCTGCAAGGACAACTTTCCACCATTATCCTGACGGCGATTTGGTCCTTGGCTA
TTGGTGGGATTTTATTTAAGACCTTGTTTATTCATCGTTTTAAAAAAATGAGCCTAGTGCTCTATTTGGTGATGGGTTGG
CTGTGTGTGACTGTGATGGGCGATTTGACGGCGGCGATGTCGCCGCTAGGATTTAAGCTTCTGCTATTAGGCGGGTTGTT
TTACACCTTAGGGGTGGTCTTCTATGTCGGTAAACGCATCCCATACAATCACGCGATTTGGCATTTATTTGTATTGGCGG
GCGCGATGAGCCACTTCTTTTGTATTTATTTAACAGTGATCTAA

Upstream 100 bases:

>100_bases
GTCCTTAAAATAAATTAGCTTACACGTGTAAGCTAATTATGGCTTTCCAATTTATCAACTGATAGACTCAGTCATTATCG
CCATCGAGTGGATCAACAGC

Downstream 100 bases:

>100_bases
CCGTTAAGGCAGCCATCAAGCTAACTTTATCTACAGCAACTCTGCGACGATTCGTTTGAGCAGAAAGGTTTCCCTGTCGA
TGGATTGCCCTTTATTGGCG

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MPSQSLIEPQMSHEKPLNISGYSLSEEIANSISHGLGVIAGVVGLVFMILKGADHLTSIQLTGVIIYGASLILLFLSSTL
YHSVTHVGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGQLSTIILTAIWSLAIGGILFKTLFIHRFKKMSLVLYLVMGW
LCVTVMGDLTAAMSPLGFKLLLLGGLFYTLGVVFYVGKRIPYNHAIWHLFVLAGAMSHFFCIYLTVI

Sequences:

>Translated_227_residues
MPSQSLIEPQMSHEKPLNISGYSLSEEIANSISHGLGVIAGVVGLVFMILKGADHLTSIQLTGVIIYGASLILLFLSSTL
YHSVTHVGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGQLSTIILTAIWSLAIGGILFKTLFIHRFKKMSLVLYLVMGW
LCVTVMGDLTAAMSPLGFKLLLLGGLFYTLGVVFYVGKRIPYNHAIWHLFVLAGAMSHFFCIYLTVI
>Mature_226_residues
PSQSLIEPQMSHEKPLNISGYSLSEEIANSISHGLGVIAGVVGLVFMILKGADHLTSIQLTGVIIYGASLILLFLSSTLY
HSVTHVGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGQLSTIILTAIWSLAIGGILFKTLFIHRFKKMSLVLYLVMGWL
CVTVMGDLTAAMSPLGFKLLLLGGLFYTLGVVFYVGKRIPYNHAIWHLFVLAGAMSHFFCIYLTVI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI52630445, Length=236, Percent_Identity=32.2033898305085, Blast_Score=100, Evalue=7e-22,
Organism=Homo sapiens, GI154759275, Length=223, Percent_Identity=30.9417040358744, Blast_Score=98, Evalue=5e-21,
Organism=Homo sapiens, GI154759277, Length=248, Percent_Identity=28.2258064516129, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI1789266, Length=214, Percent_Identity=52.803738317757, Blast_Score=220, Evalue=5e-59,
Organism=Caenorhabditis elegans, GI71996356, Length=210, Percent_Identity=34.2857142857143, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24640324, Length=226, Percent_Identity=31.4159292035398, Blast_Score=85, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24901; Mature: 24770

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSQSLIEPQMSHEKPLNISGYSLSEEIANSISHGLGVIAGVVGLVFMILKGADHLTSIQ
CCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LTGVIIYGASLILLFLSSTLYHSVTHVGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHEEECCH
LSTIILTAIWSLAIGGILFKTLFIHRFKKMSLVLYLVMGWLCVTVMGDLTAAMSPLGFKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LLLGGLFYTLGVVFYVGKRIPYNHAIWHLFVLAGAMSHFFCIYLTVI
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PSQSLIEPQMSHEKPLNISGYSLSEEIANSISHGLGVIAGVVGLVFMILKGADHLTSIQ
CCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LTGVIIYGASLILLFLSSTLYHSVTHVGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHEEECCH
LSTIILTAIWSLAIGGILFKTLFIHRFKKMSLVLYLVMGWLCVTVMGDLTAAMSPLGFKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LLLGGLFYTLGVVFYVGKRIPYNHAIWHLFVLAGAMSHFFCIYLTVI
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]