Click here to switch to the map view.

The map label for this gene is yeeY [H]

Identifier: 117920389

GI number: 117920389

Start: 2311559

End: 2312461

Strand: Reverse

Name: yeeY [H]

Synonym: Shewana3_1944

Alternate gene names: 117920389

Gene position: 2312461-2311559 (Counterclockwise)

Preceding gene: 117920390

Following gene: 117920379

Centisome position: 46.51

GC content: 51.27

Gene sequence:

>903_bases
ATGACTCGCGCGAAATCTACCCTTGAGCAATGGCGTATTTTACAGGCTGTCGTCGATTACGGCGGCTACGCGCAGGCGGC
GGAAAAGCTCAATAAGAGCCAATCCTCACTCAATCATGCGGTGGCAAAGTTGCAACACCAGCTTGGCATAGAACTACTCG
AGGTCCGAGGCCGCAAAGCTTACCTGACACCACAGGGCGAAGTATTATTGCGCCGTTCGCGCCATGTGACTCAAGCGGTC
AACGAGTTAGAACAACTTGCTAGCAACCTTGAGCAAGGTTGGGAGCCCACACTTACCATTGCTCGCGAAATCGTCTATCC
GATGGAAAGTCTAGTGTGCGCGTTAAGTGACTTTTTGCCCCATAGCCGCGGCACACGCATCATAATGTTGGACTCAGTCA
TCACAGGTACTCAAGAATTAATCCTTCAGAATAAAGTCGATATTGCGATTTGCGCCGGCATTCCGCCGAAGGGCTATTTA
TCCGAGCCCCTGTGTGAGCAGGAGCTGCATCTGGTTTGCCACCCGAGCCACCCCTTAGCTGAAATGGGTACCTTAGACGA
TGACAAGCTACTGGCGCAGCACCTGCAACTGGTGATCAAAGACACGGGCCTGCAACCCAATGTGGATATCGGTTGGTTAA
AAGCCGAGCAGCGCTGGACTGTATCTAACTTCCATGAGGCGAAAGTCATTTTAAATCAGGGCATTGGTTTCTGTTGGATC
CCATCTTTCCTTATTCAAGAAGAATTAGCCGCAGGCAAACTGGTGCGCTTACACCTCCAAGGCAGCCAGAAACGGCGGAT
TATGCTAAGCCTAGTGATCCCGAATCGTGACCAACAGGGCCCCGCTTCAAAACTGCTGGCCTCTTATCTCCTCAAACATC
ATGGTGTGAGTACAAGCGATTGA

Upstream 100 bases:

>100_bases
TAACACGATAATAGTATTGAAAAAACGATCATAGCTCGCCACTATAAGCCTCAATCTATCGCTTTTTTAGAAACCTGTCG
TTTTCGACATGAGGACAACC

Downstream 100 bases:

>100_bases
TAGCGCAGAGGTCGTTTCCTCTAGCACGTAAAAATGAGCGCTTGACCAATAGGGAATCACTATGGGTTTATCTTTATGGC
GACTGAACTTGCCAAACAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTRAKSTLEQWRILQAVVDYGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVRGRKAYLTPQGEVLLRRSRHVTQAV
NELEQLASNLEQGWEPTLTIAREIVYPMESLVCALSDFLPHSRGTRIIMLDSVITGTQELILQNKVDIAICAGIPPKGYL
SEPLCEQELHLVCHPSHPLAEMGTLDDDKLLAQHLQLVIKDTGLQPNVDIGWLKAEQRWTVSNFHEAKVILNQGIGFCWI
PSFLIQEELAAGKLVRLHLQGSQKRRIMLSLVIPNRDQQGPASKLLASYLLKHHGVSTSD

Sequences:

>Translated_300_residues
MTRAKSTLEQWRILQAVVDYGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVRGRKAYLTPQGEVLLRRSRHVTQAV
NELEQLASNLEQGWEPTLTIAREIVYPMESLVCALSDFLPHSRGTRIIMLDSVITGTQELILQNKVDIAICAGIPPKGYL
SEPLCEQELHLVCHPSHPLAEMGTLDDDKLLAQHLQLVIKDTGLQPNVDIGWLKAEQRWTVSNFHEAKVILNQGIGFCWI
PSFLIQEELAAGKLVRLHLQGSQKRRIMLSLVIPNRDQQGPASKLLASYLLKHHGVSTSD
>Mature_299_residues
TRAKSTLEQWRILQAVVDYGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVRGRKAYLTPQGEVLLRRSRHVTQAVN
ELEQLASNLEQGWEPTLTIAREIVYPMESLVCALSDFLPHSRGTRIIMLDSVITGTQELILQNKVDIAICAGIPPKGYLS
EPLCEQELHLVCHPSHPLAEMGTLDDDKLLAQHLQLVIKDTGLQPNVDIGWLKAEQRWTVSNFHEAKVILNQGIGFCWIP
SFLIQEELAAGKLVRLHLQGSQKRRIMLSLVIPNRDQQGPASKLLASYLLKHHGVSTSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=255, Percent_Identity=29.8039215686275, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789492, Length=282, Percent_Identity=25.531914893617, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1787949, Length=253, Percent_Identity=25.6916996047431, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790262, Length=185, Percent_Identity=28.1081081081081, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786401, Length=265, Percent_Identity=27.5471698113208, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI145693193, Length=271, Percent_Identity=25.830258302583, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786448, Length=302, Percent_Identity=26.158940397351, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786508, Length=259, Percent_Identity=21.6216216216216, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33514; Mature: 33383

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAKSTLEQWRILQAVVDYGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVRGRKA
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEE
YLTPQGEVLLRRSRHVTQAVNELEQLASNLEQGWEPTLTIAREIVYPMESLVCALSDFLP
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
HSRGTRIIMLDSVITGTQELILQNKVDIAICAGIPPKGYLSEPLCEQELHLVCHPSHPLA
CCCCCEEEEECCHHHCHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCEEEECCCCCHH
EMGTLDDDKLLAQHLQLVIKDTGLQPNVDIGWLKAEQRWTVSNFHEAKVILNQGIGFCWI
HHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHH
PSFLIQEELAAGKLVRLHLQGSQKRRIMLSLVIPNRDQQGPASKLLASYLLKHHGVSTSD
HHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TRAKSTLEQWRILQAVVDYGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVRGRKA
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEE
YLTPQGEVLLRRSRHVTQAVNELEQLASNLEQGWEPTLTIAREIVYPMESLVCALSDFLP
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
HSRGTRIIMLDSVITGTQELILQNKVDIAICAGIPPKGYLSEPLCEQELHLVCHPSHPLA
CCCCCEEEEECCHHHCHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCEEEECCCCCHH
EMGTLDDDKLLAQHLQLVIKDTGLQPNVDIGWLKAEQRWTVSNFHEAKVILNQGIGFCWI
HHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHH
PSFLIQEELAAGKLVRLHLQGSQKRRIMLSLVIPNRDQQGPASKLLASYLLKHHGVSTSD
HHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]