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The map label for this gene is hypD2 [H]

Identifier: 117920314

GI number: 117920314

Start: 2213489

End: 2214628

Strand: Reverse

Name: hypD2 [H]

Synonym: Shewana3_1869

Alternate gene names: 117920314

Gene position: 2214628-2213489 (Counterclockwise)

Preceding gene: 117920315

Following gene: 117920313

Centisome position: 44.54

GC content: 52.37

Gene sequence:

>1140_bases
ATGCTTGACCTAAAACTACTTTATCAAGGCTTTCGCGACCCCGATACCATAGCCTCGTTTGCGGAGGATATCGCTAAATG
CGCCCGCACACTTAAAGAGCCGATCAATATCATGGAGGTCTGTGGCGGCCATACCCACACCATCATGAAATATGGCTTAC
TGGATTTACTGCCGGAAAATATTGAATTTATCCACGGTCCCGGCTGCCCAGTGTGCGTGATGCCCAAGGAGCGAATTGAC
CAAGCCGCAGTGCTCGCCCAGCAAGAGAATGTGATTTTAGTAACCCTAGGGGATATGATCCGCGTGCCAGGATCCCAGGG
CTCACTTGCCAGTTTCAGGGCCAAGGGCTGTGATATTCGCCCTATCTATGACCCTTTAGATACGCTAAAAATCGCCCGCG
ATAATCCCGATAAAATCGTGGTGTTTTTCGCCATTGGCTTTGAAACCTCGACCCCTATGACCGCCGTGCTGCTACAGTTG
GCCGAGCAGGAAAAACTGGCGAATTTGTTGTTTCATATCAACCACGTCTTAGTACCACCCGCAATTGATGCTGTGATGCA
AGACCCTAAAGCCAGGGTAAACGCCTTCATTGGCCCTGCGCACGTCAGCGTGATCAGTGGTGCCAAAATCTATCGCCCCG
CGGTCAAGCAATACGGTACGCCTGTGGTGGTTTCGGGGTTCGAACCCGTTGATGTGATGGAGTCCATCCTGCGCATCGTG
CGGCAAAAGGTGGCGGGAACGGCGCTATTAGATATCCAATACAGCCGCGCCGTGTCCGAGGAAGGTAATCTTGCCGCTCA
GGCCAAGGTTAATCAATTTTTCCAGACTCGGCCGCAATTTCGTTGGCGCGGGCTTGGACCTATTCCCAACTCGGCGCTTG
AGTTAAGACCCGAATACGCCCACAGGGACGCTGAGAAATACTTTAAGGACAGATTACCCGTCAAAGAGATTGACGATCAT
AAGGCTTGCCAATGCGGCGATATTCTTCGCGGGCTCGCCAAACCTAAGGACTGTAAAGTCTTTGGCCGCGGCTGCAATCC
CGAAACCCCTCTCGGTAGCTGTATGGTTAGCTCCGAAGGCGCGTGTAATGCGTATTACCGCTATCAAGGCATAGATAGCA
AGGAGCCACACCATGGCTGA

Upstream 100 bases:

>100_bases
AAAGAGATAGTCTCAAAACTTGAAAATGAGACCACGCATTGAGTAATCACCGCAGTAAAAGTGATAACAAATAACAGCCA
AAACTGCGCAAGGACTGAAG

Downstream 100 bases:

>100_bases
TTTCCAACCCAAAGATAAAGCGATTCAACTCAGCCACGGTGGTGGCGGCAAAGAGATGAACAAACTTATTCGTGAACTGT
TTTTTACCGAGTTCGATAAC

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MLDLKLLYQGFRDPDTIASFAEDIAKCARTLKEPINIMEVCGGHTHTIMKYGLLDLLPENIEFIHGPGCPVCVMPKERID
QAAVLAQQENVILVTLGDMIRVPGSQGSLASFRAKGCDIRPIYDPLDTLKIARDNPDKIVVFFAIGFETSTPMTAVLLQL
AEQEKLANLLFHINHVLVPPAIDAVMQDPKARVNAFIGPAHVSVISGAKIYRPAVKQYGTPVVVSGFEPVDVMESILRIV
RQKVAGTALLDIQYSRAVSEEGNLAAQAKVNQFFQTRPQFRWRGLGPIPNSALELRPEYAHRDAEKYFKDRLPVKEIDDH
KACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSSEGACNAYYRYQGIDSKEPHHG

Sequences:

>Translated_379_residues
MLDLKLLYQGFRDPDTIASFAEDIAKCARTLKEPINIMEVCGGHTHTIMKYGLLDLLPENIEFIHGPGCPVCVMPKERID
QAAVLAQQENVILVTLGDMIRVPGSQGSLASFRAKGCDIRPIYDPLDTLKIARDNPDKIVVFFAIGFETSTPMTAVLLQL
AEQEKLANLLFHINHVLVPPAIDAVMQDPKARVNAFIGPAHVSVISGAKIYRPAVKQYGTPVVVSGFEPVDVMESILRIV
RQKVAGTALLDIQYSRAVSEEGNLAAQAKVNQFFQTRPQFRWRGLGPIPNSALELRPEYAHRDAEKYFKDRLPVKEIDDH
KACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSSEGACNAYYRYQGIDSKEPHHG
>Mature_379_residues
MLDLKLLYQGFRDPDTIASFAEDIAKCARTLKEPINIMEVCGGHTHTIMKYGLLDLLPENIEFIHGPGCPVCVMPKERID
QAAVLAQQENVILVTLGDMIRVPGSQGSLASFRAKGCDIRPIYDPLDTLKIARDNPDKIVVFFAIGFETSTPMTAVLLQL
AEQEKLANLLFHINHVLVPPAIDAVMQDPKARVNAFIGPAHVSVISGAKIYRPAVKQYGTPVVVSGFEPVDVMESILRIV
RQKVAGTALLDIQYSRAVSEEGNLAAQAKVNQFFQTRPQFRWRGLGPIPNSALELRPEYAHRDAEKYFKDRLPVKEIDDH
KACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSSEGACNAYYRYQGIDSKEPHHG

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=368, Percent_Identity=43.2065217391304, Blast_Score=337, Evalue=8e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41851; Mature: 41851

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLKLLYQGFRDPDTIASFAEDIAKCARTLKEPINIMEVCGGHTHTIMKYGLLDLLPEN
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
IEFIHGPGCPVCVMPKERIDQAAVLAQQENVILVTLGDMIRVPGSQGSLASFRAKGCDIR
CCEEECCCCCEEECCHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCHHHHHHCCCCCC
PIYDPLDTLKIARDNPDKIVVFFAIGFETSTPMTAVLLQLAEQEKLANLLFHINHVLVPP
CCCCCHHHHEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AIDAVMQDPKARVNAFIGPAHVSVISGAKIYRPAVKQYGTPVVVSGFEPVDVMESILRIV
HHHHHHCCCHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
RQKVAGTALLDIQYSRAVSEEGNLAAQAKVNQFFQTRPQFRWRGLGPIPNSALELRPEYA
HHHHCCEEEEEEHHHHHHCCCCCEEHHHHHHHHHHCCCCCEECCCCCCCCCHHHCCCHHH
HRDAEKYFKDRLPVKEIDDHKACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSSEG
HHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEECCCC
ACNAYYRYQGIDSKEPHHG
CCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MLDLKLLYQGFRDPDTIASFAEDIAKCARTLKEPINIMEVCGGHTHTIMKYGLLDLLPEN
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
IEFIHGPGCPVCVMPKERIDQAAVLAQQENVILVTLGDMIRVPGSQGSLASFRAKGCDIR
CCEEECCCCCEEECCHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCHHHHHHCCCCCC
PIYDPLDTLKIARDNPDKIVVFFAIGFETSTPMTAVLLQLAEQEKLANLLFHINHVLVPP
CCCCCHHHHEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AIDAVMQDPKARVNAFIGPAHVSVISGAKIYRPAVKQYGTPVVVSGFEPVDVMESILRIV
HHHHHHCCCHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
RQKVAGTALLDIQYSRAVSEEGNLAAQAKVNQFFQTRPQFRWRGLGPIPNSALELRPEYA
HHHHCCEEEEEEHHHHHHCCCCCEEHHHHHHHHHHCCCCCEECCCCCCCCCHHHCCCHHH
HRDAEKYFKDRLPVKEIDDHKACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSSEG
HHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEECCCC
ACNAYYRYQGIDSKEPHHG
CCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]