Click here to switch to the map view.

The map label for this gene is hypC [H]

Identifier: 117920315

GI number: 117920315

Start: 2214687

End: 2214932

Strand: Reverse

Name: hypC [H]

Synonym: Shewana3_1870

Alternate gene names: 117920315

Gene position: 2214932-2214687 (Counterclockwise)

Preceding gene: 117920316

Following gene: 117920314

Centisome position: 44.55

GC content: 43.5

Gene sequence:

>246_bases
ATGTGCCTGTCTATTCCTTCCCAAGTTGTGGCCGTGGATAACGAGCGTCAATCGGTCACCGTCGATACCTTAGGCGTCAG
GCGCGATGTGAGCAGCCATTTGATGACTGAGCCTTTAGCCATTGGTGACTATGTGCTTATCCATATCGGTTTTGTGATGA
ATAAAATTGATCGCAATGATGCACTACAAAGTCTTGAATTATATAAAGAGATAGTCTCAAAACTTGAAAATGAGACCACG
CATTGA

Upstream 100 bases:

>100_bases
CACAAATTCTGGAAGTCTCCATTAAGGATGGCGATGCCATGCGTGCCGTCGTTGCATGGCTGAACGATAACCTTCACCAC
GCTGCGGGAGAGCCACAATA

Downstream 100 bases:

>100_bases
GTAATCACCGCAGTAAAAGTGATAACAAATAACAGCCAAAACTGCGCAAGGACTGAAGATGCTTGACCTAAAACTACTTT
ATCAAGGCTTTCGCGACCCC

Product: hydrogenase assembly chaperone hypC/hupF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MCLSIPSQVVAVDNERQSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHIGFVMNKIDRNDALQSLELYKEIVSKLENETT
H

Sequences:

>Translated_81_residues
MCLSIPSQVVAVDNERQSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHIGFVMNKIDRNDALQSLELYKEIVSKLENETT
H
>Mature_81_residues
MCLSIPSQVVAVDNERQSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHIGFVMNKIDRNDALQSLELYKEIVSKLENETT
H

Specific function: Required for production of hydrogenase [H]

COG id: COG0298

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupF/hypC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019812
- InterPro:   IPR001109 [H]

Pfam domain/function: PF01455 HupF_HypC [H]

EC number: NA

Molecular weight: Translated: 9098; Mature: 9098

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLSIPSQVVAVDNERQSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHIGFVMNKIDRND
CCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHH
ALQSLELYKEIVSKLENETTH
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MCLSIPSQVVAVDNERQSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHIGFVMNKIDRND
CCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHH
ALQSLELYKEIVSKLENETTH
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12810954 [H]