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The map label for this gene is rpfG [H]

Identifier: 117920168

GI number: 117920168

Start: 2023995

End: 2025257

Strand: Reverse

Name: rpfG [H]

Synonym: Shewana3_1721

Alternate gene names: 117920168

Gene position: 2025257-2023995 (Counterclockwise)

Preceding gene: 117920170

Following gene: 117920163

Centisome position: 40.73

GC content: 45.61

Gene sequence:

>1263_bases
ATGAAAAAAAGCTGTAAAGTTTCAGTTCATCAATTACAGGTCGGCAATTTTGTGCGTTTGCCCGTGGCTTGGAAAGATCA
CCCTTTTTTATTCAGTAGCTTTCACATCAAACAAGCTGCGCAGATTGAGCTCATTAAAAATCTGGGCATCGAATTCGTGA
TTGTCGATTTAGAGCGCAGTGAAACCTCCCCCTTAAATCCAGATGCCGTTAATCCAATAAAATTGCCGCCGACGGCCGAG
ATCAATGTGTTAAAAAACGACATGGATCAATACAAGGCCGAGCAAATTGAAGTGCAAAAAAAGCTGCGCCGCGATATCCA
TAAAACCGAGCAAAACTTTACCCGCTCAGTAGCTATGATGCGCAGTCTTATTGCTAAGCTTCGCAATCGCCCACTCAATG
CAGTAGATGATGCCAAGGATTTAGTCCATACCATTGTCGAGCAATTGTTAACCTCCGATAACCTAGTACTGCATTTAATG
AGTGATGCCAAACAGGATGAGAGCATTTACTACCACTCATTAAACGTAGCCATTCTCTCTATGCTCATCGCCAAAGAGAT
GGAATGGGATCGCAGCGAAATCGAATTAGTAGGCTTAAGTGCGTTATTTCACGATGTCGGCAAACTCAAAGTGCCGCCGC
AAATTTTGAAAAAGACTACACCTTGGTCGGCGCCAGAGCTGAATTTTATCAAGCAACATCCGCTGCTGGGGATTGAACTG
CTTAAACTGGCCGATAACTTCCCTGAAGCCGCCTTGCCTCCTATTACCAATCACCATGAGTTTCTCGATGGTACGGGTTA
TCCAAAAGGGTTAAAGGAAGCAGATCTGGATAAAATCTCCCAGTTGTTAGCCGTCGTAAACGAGTACGACTCGCTTTGTT
ATCCGAGTAATCAGGGTAAGGCGCGTATGCCCTATGCCGCCTTGGGCTATTTATATAAGCAGTACAAAACCAAATTAAAT
CAGGAATATATTGGTAAGATGATCAAAATGCTCGGCATTTATCCGCCAGGGAGCGTGGTGGAGTTGTCGAGCGGTCAATA
TGCCATGGTGATGTCGGTCAATCTGCAAAAACTACTTTGCCCGAAAATCCTTGTGTATGATGCACTGGTGCCCAAAGATC
AGGCGCCGATTGTCGATCTTGAAGTCGAAGGGATAACGATAGTCCGCTGTCTGCCGCCCGCCGCACTGCCTGAAAAAGTA
CACGAGTACCTCAATCCTCGCGAGCGCGTGAGCTACTATTTTGGCGGCGATAGTCGTAAATAA

Upstream 100 bases:

>100_bases
GGCTATTTTCTACCCTTACTATGCTGACACGTTAGTTAAGTAATTGTAAAGCTGCATCATTGATATAAAATAACCCCATT
GGCTTCACGATAACAAGAAT

Downstream 100 bases:

>100_bases
TCCATAAAGAGATTCATTTGCCCAATAAAAAGCCGGAGTGACTCCGGCTTTTTGTCTCTTTCGAAATCATTGAATGTCTA
TTACAGCCAATGCTTACGTT

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MKKSCKVSVHQLQVGNFVRLPVAWKDHPFLFSSFHIKQAAQIELIKNLGIEFVIVDLERSETSPLNPDAVNPIKLPPTAE
INVLKNDMDQYKAEQIEVQKKLRRDIHKTEQNFTRSVAMMRSLIAKLRNRPLNAVDDAKDLVHTIVEQLLTSDNLVLHLM
SDAKQDESIYYHSLNVAILSMLIAKEMEWDRSEIELVGLSALFHDVGKLKVPPQILKKTTPWSAPELNFIKQHPLLGIEL
LKLADNFPEAALPPITNHHEFLDGTGYPKGLKEADLDKISQLLAVVNEYDSLCYPSNQGKARMPYAALGYLYKQYKTKLN
QEYIGKMIKMLGIYPPGSVVELSSGQYAMVMSVNLQKLLCPKILVYDALVPKDQAPIVDLEVEGITIVRCLPPAALPEKV
HEYLNPRERVSYYFGGDSRK

Sequences:

>Translated_420_residues
MKKSCKVSVHQLQVGNFVRLPVAWKDHPFLFSSFHIKQAAQIELIKNLGIEFVIVDLERSETSPLNPDAVNPIKLPPTAE
INVLKNDMDQYKAEQIEVQKKLRRDIHKTEQNFTRSVAMMRSLIAKLRNRPLNAVDDAKDLVHTIVEQLLTSDNLVLHLM
SDAKQDESIYYHSLNVAILSMLIAKEMEWDRSEIELVGLSALFHDVGKLKVPPQILKKTTPWSAPELNFIKQHPLLGIEL
LKLADNFPEAALPPITNHHEFLDGTGYPKGLKEADLDKISQLLAVVNEYDSLCYPSNQGKARMPYAALGYLYKQYKTKLN
QEYIGKMIKMLGIYPPGSVVELSSGQYAMVMSVNLQKLLCPKILVYDALVPKDQAPIVDLEVEGITIVRCLPPAALPEKV
HEYLNPRERVSYYFGGDSRK
>Mature_420_residues
MKKSCKVSVHQLQVGNFVRLPVAWKDHPFLFSSFHIKQAAQIELIKNLGIEFVIVDLERSETSPLNPDAVNPIKLPPTAE
INVLKNDMDQYKAEQIEVQKKLRRDIHKTEQNFTRSVAMMRSLIAKLRNRPLNAVDDAKDLVHTIVEQLLTSDNLVLHLM
SDAKQDESIYYHSLNVAILSMLIAKEMEWDRSEIELVGLSALFHDVGKLKVPPQILKKTTPWSAPELNFIKQHPLLGIEL
LKLADNFPEAALPPITNHHEFLDGTGYPKGLKEADLDKISQLLAVVNEYDSLCYPSNQGKARMPYAALGYLYKQYKTKLN
QEYIGKMIKMLGIYPPGSVVELSSGQYAMVMSVNLQKLLCPKILVYDALVPKDQAPIVDLEVEGITIVRCLPPAALPEKV
HEYLNPRERVSYYFGGDSRK

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 47547; Mature: 47547

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSCKVSVHQLQVGNFVRLPVAWKDHPFLFSSFHIKQAAQIELIKNLGIEFVIVDLERS
CCCCCEEEEEEEECCCEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEEECCC
ETSPLNPDAVNPIKLPPTAEINVLKNDMDQYKAEQIEVQKKLRRDIHKTEQNFTRSVAMM
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSLIAKLRNRPLNAVDDAKDLVHTIVEQLLTSDNLVLHLMSDAKQDESIYYHSLNVAILS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEHHHHHHHH
MLIAKEMEWDRSEIELVGLSALFHDVGKLKVPPQILKKTTPWSAPELNFIKQHPLLGIEL
HHHHHHCCCCCCHHHEEHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHCCCHHHHH
LKLADNFPEAALPPITNHHEFLDGTGYPKGLKEADLDKISQLLAVVNEYDSLCYPSNQGK
HHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
ARMPYAALGYLYKQYKTKLNQEYIGKMIKMLGIYPPGSVVELSSGQYAMVMSVNLQKLLC
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHH
PKILVYDALVPKDQAPIVDLEVEGITIVRCLPPAALPEKVHEYLNPRERVSYYFGGDSRK
HHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHCCHHHHEEEEECCCCCC
>Mature Secondary Structure
MKKSCKVSVHQLQVGNFVRLPVAWKDHPFLFSSFHIKQAAQIELIKNLGIEFVIVDLERS
CCCCCEEEEEEEECCCEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEEECCC
ETSPLNPDAVNPIKLPPTAEINVLKNDMDQYKAEQIEVQKKLRRDIHKTEQNFTRSVAMM
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSLIAKLRNRPLNAVDDAKDLVHTIVEQLLTSDNLVLHLMSDAKQDESIYYHSLNVAILS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEHHHHHHHH
MLIAKEMEWDRSEIELVGLSALFHDVGKLKVPPQILKKTTPWSAPELNFIKQHPLLGIEL
HHHHHHCCCCCCHHHEEHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHCCCHHHHH
LKLADNFPEAALPPITNHHEFLDGTGYPKGLKEADLDKISQLLAVVNEYDSLCYPSNQGK
HHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
ARMPYAALGYLYKQYKTKLNQEYIGKMIKMLGIYPPGSVVELSSGQYAMVMSVNLQKLLC
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHH
PKILVYDALVPKDQAPIVDLEVEGITIVRCLPPAALPEKVHEYLNPRERVSYYFGGDSRK
HHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHCCHHHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]