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The map label for this gene is trbI [H]

Identifier: 117919739

GI number: 117919739

Start: 1501877

End: 1503157

Strand: Direct

Name: trbI [H]

Synonym: Shewana3_1291

Alternate gene names: 117919739

Gene position: 1501877-1503157 (Clockwise)

Preceding gene: 117919738

Following gene: 117919740

Centisome position: 30.21

GC content: 67.84

Gene sequence:

>1281_bases
ATGAGCCAGGATGACACTCCCGACCTCGCCGCTCCGCCGGCGGGCAAGGTGGCGCCCGAGGCTGTGGCGCTGCGTGCCCA
GCCGCGTCCGGTCACGCGCCTGAACCGGCGCACGCTGGCCATCCTCGCGGGCGGCCTGTCGGTCGCCGTGCTTGGGGCCA
CGATCTGGTCGCTGCAACCGCATCGGCGCGGTACGGGCGAGCAAACCGAGCTTTACAACGTCGATCGCGTCTCGAAGTCC
GAAGGGCTGGATGCGCTACCGACGGACTACTCGAAGCTGCCGCCAGCCTTGCCGCACGATGTACCCGAGCTGGGGCCGCC
GCTGCCGGGCGACCTCGGCCCGGCCATCGTGAAGTCGCAGCAGCCGGTGACAGCCGCCTACGCGGCTCCCGGCCACGACC
CGAACGATGCGCTGCGCAAGGAAGCCGAAGCTGCCGCAGCATCGTCCGTGTTCTTCCGCTCGGGTGCGCAGGCGGCCGCG
CCGGTCGCGCAGTCGCAGGCCGCCACCGCGCCGGGCTTCGCCGCCAATGCGGCGTTCGACCCGATGGCCGCCGGGCCGGC
CTCGACGGCGGCCCAGCCTGCCGATCCGACCGCCGTGCAGAACCGGCAAGACCAGAAGGAGGCTTTCCTGAAAGGCGGCT
CTACGGAAACCCGCAATTCCGGCAACCTGACCCTGCCGGCTTCGCCGTATCAGGTCATGGCCGGAACGGTGGTTGCCGGA
GCGCTGGTGACGGGCATCAAGTCGGACTTGCCCGGCGACGTGATCGCCACTGTGACAGAGCCGGTCTATGACACGGCCAC
CGGGCGTTTCCTGCTGATCCCGCAGGGTTCGCGCATCCTGGGCAAATACAACAGCCAGGTCAGTTACGGGCAGAGCCGCG
TTCAAGTCGTCTGGAATCGGATCATTCTGCCGGACACGTCTTCGTTGACGCTCGACAATCTGGCCGGCGCAGATCCGGCC
GGCTATGCCGGCCTGGAAGACGATGTGGACTACCACTGGGGCCGCATCTTTGCCGGTGCGGCGCTGACGACCCTGCTGGG
CGTCGGCGCCGAACTGGCCGCGCCGGAGAATCGACAAGATGGCGATCGCGTCATCATCGCCGGGCGTGACAGTTTGCAGG
ACACGGTGAATCAAATCGGCCAGGAAGTGACCCGGCGCAACCTCAACATCCAGCCCACCTTGACCCAACGGCCCGGCCTG
CCGGTGCGGATCATCGTCAACCGCGACTTGGTGTTGCGGCCGTACCAGCCGCTGTTCTTCAATCGGGGGACTTCACGATG
A

Upstream 100 bases:

>100_bases
TGGATCGCCTGTTCGGCGCGGCCGAACTGCGGCTGGGCGGCGATGGCGGCGACGTGGTGCGGATCGAGCGCACCGATGGC
GTGGCGCGGAGGAACTGACC

Downstream 100 bases:

>100_bases
GCACAACCAAGAAGCTGCGGCTGGGGCCGCTGCCCAAGACCGAAAGCGTCAAGCTCACCTTTGCCTGCCCGGCCAGTCTT
AAAACCGACCTCGACCGCTA

Product: conjugation TrbI family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MSQDDTPDLAAPPAGKVAPEAVALRAQPRPVTRLNRRTLAILAGGLSVAVLGATIWSLQPHRRGTGEQTELYNVDRVSKS
EGLDALPTDYSKLPPALPHDVPELGPPLPGDLGPAIVKSQQPVTAAYAAPGHDPNDALRKEAEAAAASSVFFRSGAQAAA
PVAQSQAATAPGFAANAAFDPMAAGPASTAAQPADPTAVQNRQDQKEAFLKGGSTETRNSGNLTLPASPYQVMAGTVVAG
ALVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLAGADPA
GYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDGDRVIIAGRDSLQDTVNQIGQEVTRRNLNIQPTLTQRPGL
PVRIIVNRDLVLRPYQPLFFNRGTSR

Sequences:

>Translated_426_residues
MSQDDTPDLAAPPAGKVAPEAVALRAQPRPVTRLNRRTLAILAGGLSVAVLGATIWSLQPHRRGTGEQTELYNVDRVSKS
EGLDALPTDYSKLPPALPHDVPELGPPLPGDLGPAIVKSQQPVTAAYAAPGHDPNDALRKEAEAAAASSVFFRSGAQAAA
PVAQSQAATAPGFAANAAFDPMAAGPASTAAQPADPTAVQNRQDQKEAFLKGGSTETRNSGNLTLPASPYQVMAGTVVAG
ALVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLAGADPA
GYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDGDRVIIAGRDSLQDTVNQIGQEVTRRNLNIQPTLTQRPGL
PVRIIVNRDLVLRPYQPLFFNRGTSR
>Mature_425_residues
SQDDTPDLAAPPAGKVAPEAVALRAQPRPVTRLNRRTLAILAGGLSVAVLGATIWSLQPHRRGTGEQTELYNVDRVSKSE
GLDALPTDYSKLPPALPHDVPELGPPLPGDLGPAIVKSQQPVTAAYAAPGHDPNDALRKEAEAAAASSVFFRSGAQAAAP
VAQSQAATAPGFAANAAFDPMAAGPASTAAQPADPTAVQNRQDQKEAFLKGGSTETRNSGNLTLPASPYQVMAGTVVAGA
LVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLAGADPAG
YAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDGDRVIIAGRDSLQDTVNQIGQEVTRRNLNIQPTLTQRPGLP
VRIIVNRDLVLRPYQPLFFNRGTSR

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 44728; Mature: 44596

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDDTPDLAAPPAGKVAPEAVALRAQPRPVTRLNRRTLAILAGGLSVAVLGATIWSLQP
CCCCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCEEEEEEECCHHHHHHHHHHHHCCC
HRRGTGEQTELYNVDRVSKSEGLDALPTDYSKLPPALPHDVPELGPPLPGDLGPAIVKSQ
CCCCCCCCCEEECCHHHHHHCCCCCCCCCHHHCCCCCCCCCHHCCCCCCCCCCHHHHCCC
QPVTAAYAAPGHDPNDALRKEAEAAAASSVFFRSGAQAAAPVAQSQAATAPGFAANAAFD
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHCCCCCCCCCCCCCC
PMAAGPASTAAQPADPTAVQNRQDQKEAFLKGGSTETRNSGNLTLPASPYQVMAGTVVAG
CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHH
ALVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGKYNSQVSYGQSRVQVVWNR
HHHHHHHHCCCCCEEEHHHCCHHHCCCCCEEEEECCCHHHHCCCCCHHHCHHHHHHHHHE
IILPDTSSLTLDNLAGADPAGYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQD
EECCCCCCCEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCC
GDRVIIAGRDSLQDTVNQIGQEVTRRNLNIQPTLTQRPGLPVRIIVNRDLVLRPYQPLFF
CCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEECCCCHHEE
NRGTSR
CCCCCC
>Mature Secondary Structure 
SQDDTPDLAAPPAGKVAPEAVALRAQPRPVTRLNRRTLAILAGGLSVAVLGATIWSLQP
CCCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCEEEEEEECCHHHHHHHHHHHHCCC
HRRGTGEQTELYNVDRVSKSEGLDALPTDYSKLPPALPHDVPELGPPLPGDLGPAIVKSQ
CCCCCCCCCEEECCHHHHHHCCCCCCCCCHHHCCCCCCCCCHHCCCCCCCCCCHHHHCCC
QPVTAAYAAPGHDPNDALRKEAEAAAASSVFFRSGAQAAAPVAQSQAATAPGFAANAAFD
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHCCCCCCCCCCCCCC
PMAAGPASTAAQPADPTAVQNRQDQKEAFLKGGSTETRNSGNLTLPASPYQVMAGTVVAG
CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHH
ALVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGKYNSQVSYGQSRVQVVWNR
HHHHHHHHCCCCCEEEHHHCCHHHCCCCCEEEEECCCHHHHCCCCCHHHCHHHHHHHHHE
IILPDTSSLTLDNLAGADPAGYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQD
EECCCCCCCEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCC
GDRVIIAGRDSLQDTVNQIGQEVTRRNLNIQPTLTQRPGLPVRIIVNRDLVLRPYQPLFF
CCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEECCCCHHEE
NRGTSR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]