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The map label for this gene is 117919583

Identifier: 117919583

GI number: 117919583

Start: 1339242

End: 1339931

Strand: Direct

Name: 117919583

Synonym: Shewana3_1134

Alternate gene names: NA

Gene position: 1339242-1339931 (Clockwise)

Preceding gene: 117919579

Following gene: 117919585

Centisome position: 26.93

GC content: 45.94

Gene sequence:

>690_bases
ATGGAAACCGAACATATCAAAGTTAAAGTCTGGGATTTACCCACACGCTTTTTTCACTGGGGCATGGTGGCCCTCATGGC
CTTACTCTGGTGGAGTGCCGAAGTGGGCGAAATGCAATGGCACCAGATCTTTGCTTATAGTTTGTTGATCCTGATTGGCT
TTCGGCTTTTATGGGGCTTGATTGGCAGTGATACTGCGAGGTTTAGTCACTTCGTGCATCATCCCAAGGTGGTGTTTGAG
TATTTGAAAGATGTTCGTGCAAAGGGCGTGTCAGTGGTTTTAGGGCATAACCCGATGGGCGGTTATATGGTGATTGTGTT
GATTGCCATTATCAGCTTACAGCTAATCACTGGACTCTTTGCTACCGATGATGTGTTTACCGAAGGTCCACTGTACAGCT
ATGTGAGTGCTGATACTGCTTCGTTTCTCACTTGGTTGCATAAAATGAATTTCAACCTCATCTTAGCCTTGAGTGCCGTG
CATGTGTTGGCTGTCGTTGTACACGCGCTTAAAGGTGACAAGTTAGTGGGAGCCATGCTCAGCGGTTACAAACGCGTGTC
TAAAGTTGAGCACGCCAAATCTGAGACTCAGTTGGTGTTTAAATCACACTGGTTGGCTTTAATTGTGCTGTTAATCATCG
CTGGAGTGGTGTTTACCTATTTGATGTGGCCCATAGTACAAGTGCTCTAA

Upstream 100 bases:

>100_bases
CAGTCTTTCCCATCATTTACCTATCTTTACTTTAAGTTTTTCATTAGATCCCGATAAAATACCTTCACTTATTTCATTGC
TCAGTCGAGTGGCAGGTATT

Downstream 100 bases:

>100_bases
CAAGTGCTGAACATTAAAAAAGCCTGCATGTAGCAGGCTTTTTTATTAGACATTACAACGCGTAATTAGTCTTTTTTGTA
CACGTCGTGACAGCCTTTAC

Product: cytochrome B561

Products: NA

Alternate protein names: Cytochrome; Nickel-Dependent Hydrogenase B-Type Cytochrome Subunit; Hydrogenase Cytochrome B-Type Subunit; B-Type Cytochrome; Cytochrome B/B6 Domain; Nickel-Dependent Hydrogenase Cytochrome B Subunit; Hydrogenase Cytochrome B-Type; Hydrogenase Cytochrome B-Type Subunit Protein; Nickel-Dependent Hydrogenase; Cytochrome B Oxidoreductase Protein; Integral Membrane Protein; Cytochrome C Family Protein; Ni/Fe-Hydrogenase 1 B-Type Cytochrome Subunit

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
METEHIKVKVWDLPTRFFHWGMVALMALLWWSAEVGEMQWHQIFAYSLLILIGFRLLWGLIGSDTARFSHFVHHPKVVFE
YLKDVRAKGVSVVLGHNPMGGYMVIVLIAIISLQLITGLFATDDVFTEGPLYSYVSADTASFLTWLHKMNFNLILALSAV
HVLAVVVHALKGDKLVGAMLSGYKRVSKVEHAKSETQLVFKSHWLALIVLLIIAGVVFTYLMWPIVQVL

Sequences:

>Translated_229_residues
METEHIKVKVWDLPTRFFHWGMVALMALLWWSAEVGEMQWHQIFAYSLLILIGFRLLWGLIGSDTARFSHFVHHPKVVFE
YLKDVRAKGVSVVLGHNPMGGYMVIVLIAIISLQLITGLFATDDVFTEGPLYSYVSADTASFLTWLHKMNFNLILALSAV
HVLAVVVHALKGDKLVGAMLSGYKRVSKVEHAKSETQLVFKSHWLALIVLLIIAGVVFTYLMWPIVQVL
>Mature_229_residues
METEHIKVKVWDLPTRFFHWGMVALMALLWWSAEVGEMQWHQIFAYSLLILIGFRLLWGLIGSDTARFSHFVHHPKVVFE
YLKDVRAKGVSVVLGHNPMGGYMVIVLIAIISLQLITGLFATDDVFTEGPLYSYVSADTASFLTWLHKMNFNLILALSAV
HVLAVVVHALKGDKLVGAMLSGYKRVSKVEHAKSETQLVFKSHWLALIVLLIIAGVVFTYLMWPIVQVL

Specific function: Unknown

COG id: COG3658

COG function: function code C; Cytochrome b

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25874; Mature: 25874

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METEHIKVKVWDLPTRFFHWGMVALMALLWWSAEVGEMQWHQIFAYSLLILIGFRLLWGL
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IGSDTARFSHFVHHPKVVFEYLKDVRAKGVSVVLGHNPMGGYMVIVLIAIISLQLITGLF
HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ATDDVFTEGPLYSYVSADTASFLTWLHKMNFNLILALSAVHVLAVVVHALKGDKLVGAML
HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SGYKRVSKVEHAKSETQLVFKSHWLALIVLLIIAGVVFTYLMWPIVQVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
METEHIKVKVWDLPTRFFHWGMVALMALLWWSAEVGEMQWHQIFAYSLLILIGFRLLWGL
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IGSDTARFSHFVHHPKVVFEYLKDVRAKGVSVVLGHNPMGGYMVIVLIAIISLQLITGLF
HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ATDDVFTEGPLYSYVSADTASFLTWLHKMNFNLILALSAVHVLAVVVHALKGDKLVGAML
HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SGYKRVSKVEHAKSETQLVFKSHWLALIVLLIIAGVVFTYLMWPIVQVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA